BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0226900 Os12g0226900|AK060453
(346 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0226900 Similar to Allyl alcohol dehydrogenase 706 0.0
Os12g0226700 Similar to Allyl alcohol dehydrogenase 615 e-176
Os04g0497000 Similar to Allyl alcohol dehydrogenase 470 e-133
Os11g0255500 Similar to Allyl alcohol dehydrogenase 464 e-131
Os01g0891300 Similar to Allyl alcohol dehydrogenase 409 e-114
Os12g0226400 Similar to Quinone oxidoreductase-like protein 320 1e-87
Os12g0226300 Alcohol dehydrogenase superfamily, zinc-contai... 208 4e-54
Os06g0602900 Alcohol dehydrogenase superfamily, zinc-contai... 136 2e-32
AK060364 115 5e-26
Os12g0225900 Alcohol dehydrogenase superfamily, zinc-contai... 108 5e-24
Os09g0459800 Similar to ARP protein 102 4e-22
>Os12g0226900 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MAATASNKRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRN 60
MAATASNKRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRN
Sbjct: 1 MAATASNKRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRN 60
Query: 61 RMTRHEVPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPESL 120
RMTRHEVPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPESL
Sbjct: 61 RMTRHEVPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPESL 120
Query: 121 FRINHPKLPLSYYTGILGMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKII 180
FRINHPKLPLSYYTGILGMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKII
Sbjct: 121 FRINHPKLPLSYYTGILGMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKII 180
Query: 181 GCYVVGSAGSDEKVSLLKTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLD 240
GCYVVGSAGSDEKVSLLKTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLD
Sbjct: 181 GCYVVGSAGSDEKVSLLKTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLD 240
Query: 241 AVLPNMRLGGRIAACGMISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFEDE 300
AVLPNMRLGGRIAACGMISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFEDE
Sbjct: 241 AVLPNMRLGGRIAACGMISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFEDE 300
Query: 301 MARYLKEGKVAYVEDVVEGLDAAPAALIKLFTGRNVGKQLVAIARE 346
MARYLKEGKVAYVEDVVEGLDAAPAALIKLFTGRNVGKQLVAIARE
Sbjct: 301 MARYLKEGKVAYVEDVVEGLDAAPAALIKLFTGRNVGKQLVAIARE 346
>Os12g0226700 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 615 bits (1587), Expect = e-176, Method: Compositional matrix adjust.
Identities = 296/345 (85%), Positives = 322/345 (93%), Gaps = 1/345 (0%)
Query: 2 AATASNKRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRNR 61
AAT SNKRVILKRYVTGLLSEDDMEVVT E PPL V P GS+ VVVKNLYVSCDPYMRNR
Sbjct: 3 AATVSNKRVILKRYVTGLLSEDDMEVVTVEAPPLDV-PTGSKGVVVKNLYVSCDPYMRNR 61
Query: 62 MTRHEVPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPESLF 121
MT HE+PSY+ DF+PGEVL NFGVM+VISSGH DFKAGDLVWG+TGWEEYTVINNPESLF
Sbjct: 62 MTHHELPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINNPESLF 121
Query: 122 RINHPKLPLSYYTGILGMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIG 181
+INHP+LPLSYYTGILGMPGLTAYAGFF+V KPKKGEYVFIS ASGAVGQ+VGQLAKI G
Sbjct: 122 KINHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGEYVFISGASGAVGQVVGQLAKITG 181
Query: 182 CYVVGSAGSDEKVSLLKTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLDA 241
CYV+GSAG DEKV+LLK+KFGF+DAFNYKKE DLEAALRRYFPEGIDIY+ENVGG+ LDA
Sbjct: 182 CYVIGSAGYDEKVNLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLDA 241
Query: 242 VLPNMRLGGRIAACGMISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFEDEM 301
VLPNM LGGRI ACGMISQYNLE+PEGV+NL+YIVTKRLRMEGF VFD+YDRYY+FE+EM
Sbjct: 242 VLPNMSLGGRIVACGMISQYNLEQPEGVRNLYYIVTKRLRMEGFHVFDYYDRYYRFEEEM 301
Query: 302 ARYLKEGKVAYVEDVVEGLDAAPAALIKLFTGRNVGKQLVAIARE 346
A YLKE KV+YVEDVVEGLD APAALI+LFTGR+VGKQLVA+ARE
Sbjct: 302 AGYLKEEKVSYVEDVVEGLDTAPAALIRLFTGRSVGKQLVAVARE 346
>Os04g0497000 Similar to Allyl alcohol dehydrogenase
Length = 345
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/348 (65%), Positives = 280/348 (80%), Gaps = 5/348 (1%)
Query: 1 MAATASNKRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSE-AVVVKNLYVSCDPYMR 59
MAAT NK+++L+ +VTG E DME+V + VP G++ AV+VKNLY+SCDPYMR
Sbjct: 1 MAAT--NKKIVLRNHVTGFPKESDMELVAATGAAPSRVPEGTDGAVLVKNLYLSCDPYMR 58
Query: 60 NRMTRHEVPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPE- 118
RM+ H+ SYV F+ GE + +GV +V+ S HP FKAGDLVWG+TGWEEY++I +P
Sbjct: 59 GRMSSHD-GSYVDAFVVGEAITGYGVGKVVDSSHPGFKAGDLVWGMTGWEEYSLIKDPSR 117
Query: 119 SLFRINHPKLPLSYYTGILGMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAK 178
+LF I HP LPLSYYTG+LGM G TAY GF E+ P++GE V++SAASGAVGQ+VGQ AK
Sbjct: 118 ALFAIRHPDLPLSYYTGLLGMAGFTAYVGFHEICAPREGERVYVSAASGAVGQLVGQFAK 177
Query: 179 IIGCYVVGSAGSDEKVSLLKTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGET 238
++GCYVVGSAGSD+KV LL+ KFGF+DAFNYKKE DL AAL+R FPEGIDIYFENVGG
Sbjct: 178 LMGCYVVGSAGSDDKVRLLREKFGFDDAFNYKKESDLSAALKRCFPEGIDIYFENVGGAM 237
Query: 239 LDAVLPNMRLGGRIAACGMISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFE 298
LDAVL NMR+ GR+AACGMISQYNLE P+ V NL IVTKRLR+EGF+V D Y RY ++E
Sbjct: 238 LDAVLLNMRVRGRVAACGMISQYNLEHPDPVHNLTAIVTKRLRIEGFIVSDHYARYREYE 297
Query: 299 DEMARYLKEGKVAYVEDVVEGLDAAPAALIKLFTGRNVGKQLVAIARE 346
++ ARY+KEGK+AYVEDV EGL+ APAALI LF+GRNVGKQ+V +ARE
Sbjct: 298 EKAARYVKEGKIAYVEDVAEGLENAPAALIGLFSGRNVGKQVVVVARE 345
>Os11g0255500 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/344 (65%), Positives = 274/344 (79%), Gaps = 4/344 (1%)
Query: 7 NKRVILKRYVT-GLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRNRMTRH 65
N++V+L+RYVT G + DDMEVV++ + P + + AV+VKN+Y+SCDP+MR RMT+H
Sbjct: 16 NRKVVLRRYVTAGYPTVDDMEVVSSTMMPRVPLGTMAPAVMVKNIYLSCDPWMRGRMTKH 75
Query: 66 E--VPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPESLFRI 123
+ DF+ GE + NFGV +V+ S HP F AGDLVWG+ GWEEY++I PE+L +I
Sbjct: 76 DDATAEIAEDFVLGEAMVNFGVSKVVDSTHPVFAAGDLVWGLCGWEEYSLITQPETLHKI 135
Query: 124 NHPKLPLSYYTGILGMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCY 183
NHP LPLSYYTG+LG+ GLTAYA FFEV KPKKGE VF+SAASGAVGQIVGQLAKI GCY
Sbjct: 136 NHPDLPLSYYTGVLGVTGLTAYAAFFEVGKPKKGETVFVSAASGAVGQIVGQLAKIAGCY 195
Query: 184 VVGSAGSDEKVSLLKTKFGFNDAFNYKKEP-DLEAALRRYFPEGIDIYFENVGGETLDAV 242
VVGSAGSDEKV+LLKTKFGF+DAFNYKKE DL ALRR FP+GIDIYF+NVGG TLDA
Sbjct: 196 VVGSAGSDEKVTLLKTKFGFHDAFNYKKESNDLTGALRRCFPDGIDIYFDNVGGATLDAA 255
Query: 243 LPNMRLGGRIAACGMISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFEDEMA 302
L NMR GGR+ CGMISQYNL+ PEGV N+ I++K +R+EGF VF+ + Y FEDEMA
Sbjct: 256 LVNMRRGGRVVVCGMISQYNLQEPEGVHNVIQILSKTIRVEGFAVFNHFGLYPMFEDEMA 315
Query: 303 RYLKEGKVAYVEDVVEGLDAAPAALIKLFTGRNVGKQLVAIARE 346
RYLKEGKV ++DVV+G++ A ALI +F+GRNVGK LVA+A E
Sbjct: 316 RYLKEGKVTVLQDVVKGIEKASEALIGMFSGRNVGKLLVAVADE 359
>Os01g0891300 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/348 (58%), Positives = 260/348 (74%), Gaps = 4/348 (1%)
Query: 2 AATASNKRVILKRYVTGLL-SEDDMEVVTTEVPPLAV--VPAGSEAVVVKNLYVSCDPYM 58
A A N++V+L+ Y+ G EDDM +V L V A + AV+VKNLY+SCDPYM
Sbjct: 7 APMARNRKVVLREYIAGRPPREDDMVLVDGGTVALRVPEAAAPAPAVLVKNLYLSCDPYM 66
Query: 59 RNRMTRHEVPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPE 118
R RM R SY+ F PG V+ GV RV+ S HP F AGD+V G+TGWEEY++I+ PE
Sbjct: 67 RGRM-RDFHGSYIPPFKPGSVIEGLGVARVVDSTHPGFSAGDIVSGMTGWEEYSLIDRPE 125
Query: 119 SLFRINHPKLPLSYYTGILGMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAK 178
L +I +PLSY+ G+LGMPG TAYAGF+E+ PKKGE+VF+SAASGAVGQIVGQLAK
Sbjct: 126 QLSKIQQSDIPLSYHLGLLGMPGFTAYAGFYEICSPKKGEFVFVSAASGAVGQIVGQLAK 185
Query: 179 IIGCYVVGSAGSDEKVSLLKTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGET 238
+ GCYVVGSAG+++KV LLK KFGF+ AFNYK+EPDL AAL+RYFPEGIDIYFENVGG
Sbjct: 186 LHGCYVVGSAGTNQKVELLKGKFGFDAAFNYKEEPDLTAALKRYFPEGIDIYFENVGGPM 245
Query: 239 LDAVLPNMRLGGRIAACGMISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFE 298
LDAVL NMR GRIA CGM+SQ L P G+ N+F +V KR+RM+GF+ D + QF
Sbjct: 246 LDAVLLNMRTHGRIAVCGMVSQNALTDPVGIHNIFCLVPKRIRMQGFIQSDHLHMFPQFV 305
Query: 299 DEMARYLKEGKVAYVEDVVEGLDAAPAALIKLFTGRNVGKQLVAIARE 346
+MA++ ++GK+ YVED+ GL+ APAAL+ LF+G+NVGK++V +++E
Sbjct: 306 SDMAKHYRDGKIVYVEDMSIGLENAPAALVGLFSGKNVGKKVVCVSQE 353
>Os12g0226400 Similar to Quinone oxidoreductase-like protein
Length = 204
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 159/207 (76%), Positives = 177/207 (85%), Gaps = 8/207 (3%)
Query: 138 GMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYVVGSAGSDEKVSLL 197
GM GLTAY GFFE+SKPKK A GA+GQIVGQLAKI GCYVVGSAGSD+KV+LL
Sbjct: 6 GMHGLTAYVGFFEMSKPKK--------ACGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLL 57
Query: 198 KTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLDAVLPNMRLGGRIAACGM 257
KTKFGF+DAFNYKKE DLEAAL+R FPEGIDI FENVGG LDAVLPNMRLGGRI CGM
Sbjct: 58 KTKFGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGM 117
Query: 258 ISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFEDEMARYLKEGKVAYVEDVV 317
ISQY+LERPEGV+NL YI+TKRLRMEGF++FD Y QFE+EMA YL+EGKV Y+ED+V
Sbjct: 118 ISQYHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIV 177
Query: 318 EGLDAAPAALIKLFTGRNVGKQLVAIA 344
+GLDAAPAALI ++ G NVGKQLVAIA
Sbjct: 178 QGLDAAPAALIGIYNGLNVGKQLVAIA 204
>Os12g0226300 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 149
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/143 (72%), Positives = 121/143 (84%), Gaps = 7/143 (4%)
Query: 1 MAATA-SNKRVILKRYVT----GLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCD 55
MA A SNKRVILKRY+T G L D+MEVVT E PL+V PAGS AV+VKNLY+SCD
Sbjct: 1 MALVAVSNKRVILKRYLTACEIGQLG-DEMEVVTAEAVPLSV-PAGSSAVLVKNLYISCD 58
Query: 56 PYMRNRMTRHEVPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVIN 115
PY+RNRM RHEVP+Y+SDF+PGEV+ + GVM+VISSGH DFKAGDLVWG+TGWEEYT+IN
Sbjct: 59 PYLRNRMIRHEVPTYISDFVPGEVVTSHGVMKVISSGHLDFKAGDLVWGMTGWEEYTLIN 118
Query: 116 NPESLFRINHPKLPLSYYTGILG 138
NPESLF+IN+P+ PLS YTG+L
Sbjct: 119 NPESLFKINYPEFPLSNYTGVLA 141
>Os06g0602900 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 241
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 119/232 (51%), Gaps = 47/232 (20%)
Query: 7 NKRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRNRMTRHE 66
++ V ++ +V GL SEDD EV V P E V+V+NLY+S DPY NRM R
Sbjct: 5 SRYVAVRHHVEGLPSEDDFEVKAARVRWW---PESGE-VLVRNLYLSVDPYQLNRMKRRS 60
Query: 67 VPSYVSD-FIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVIN-NPESLFR-- 122
D +PGE + +G V++S ++K GD+V G+ GWE+YT+ +P L
Sbjct: 61 ASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPSPGVLMSKL 120
Query: 123 INHPKLPLSYYTGILG---------------------------------------MPGLT 143
LPLS++ LG G+T
Sbjct: 121 AASDDLPLSHHLSALGERRRRRRRAPRHARMQFLLICLSVSVAPGGDRWIEHVAGTSGMT 180
Query: 144 AYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYVVGSAGSDEKVS 195
AYAG +EV +P+ GE VF+SAASG+VG +VGQ AK+ GCYVVG AG++ KVS
Sbjct: 181 AYAGLYEVGRPEAGEKVFVSAASGSVGSLVGQFAKLAGCYVVGCAGTNAKVS 232
>AK060364
Length = 332
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 160/325 (49%), Gaps = 33/325 (10%)
Query: 30 TEVPPLAVVPAGSEA-VVVKNLYV---SCDPYMRNRMTRHEVPSYVSDFIPGEVLANFGV 85
T + + +PA +E VVVKN YV + D + N + +P F G L G
Sbjct: 19 TRIVEVTELPAAAEGHVVVKNHYVGINATDVIITNGLYDRPLP-----FSCG--LEGVGE 71
Query: 86 MRVISSGHPDFKAGDLV--WGITGWEEYTVI--NNPESLFRINHPKLPLSYYTGILGMPG 141
+ + G +FK GD + + + EY + + I+ LP+ + G
Sbjct: 72 VVTVGEGVENFKIGDAIAYQKMGAFTEYIAVPAATAHKVPAIDPSVLPVL-------VQG 124
Query: 142 LTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYVVGSAGSDEKVSLLKTKF 201
++A +V + K GE V ++AA+G GQ V QLAK+ G +V+G+ SDEK +LK +
Sbjct: 125 ISAAVALEQVGEMKSGETVLVTAAAGGAGQFVVQLAKLAGNHVIGTTSSDEKAEVLK-EL 183
Query: 202 GFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLDAVLPNMRLGGRIAACGMISQY 261
G + NY KE D++ L+ +P+G+D+ F+ VGGET A + N+ + GR+ G IS Y
Sbjct: 184 GCDRVINYNKE-DIDTVLKTEYPKGVDLVFDTVGGETFKAAVQNIAVRGRLIVFGNISGY 242
Query: 262 NLERPEGVKNLF------YIVTKRLRMEGFLVFDFYDRYYQFEDEMARYLKEGKVAYVED 315
LE + + L ++ + + GF + F DR ++ + + EGK+ D
Sbjct: 243 -LEDHKAAEPLLSSQVNAILLDRASSVRGFNLSKFADRIPVNLAKLFQLINEGKLKPGVD 301
Query: 316 VVE--GLDAAPAALIKLFTGRNVGK 338
E GL+ A+ +F +NVGK
Sbjct: 302 KTEFRGLEGIADAIEYMFARKNVGK 326
>Os12g0225900 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 111
Score = 108 bits (271), Expect = 5e-24, Method: Composition-based stats.
Identities = 56/70 (80%), Positives = 60/70 (85%), Gaps = 3/70 (4%)
Query: 128 LPLSYYTGIL---GMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYV 184
LP+S IL G+ GLTAY GFFEVSKPKKG+YVF+SAASGAVGQIVGQLAKI GCYV
Sbjct: 3 LPVSLLYLILDNSGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYV 62
Query: 185 VGSAGSDEKV 194
VGSAGSDEKV
Sbjct: 63 VGSAGSDEKV 72
>Os09g0459800 Similar to ARP protein
Length = 634
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 8/209 (3%)
Query: 141 GLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYVVGSAGSDEKVSLLKTK 200
GLTA + + G+ V ++AA+G GQ QLAK+ G VV + G K +LL +
Sbjct: 417 GLTASIALEKAGQMASGQVVLVTAAAGGTGQFAVQLAKLAGNKVVATCGGKCKAALLSS- 475
Query: 201 FGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLDAVLPNMRLGGRIAACGMISQ 260
G + NY+ E ++ L++ FP G DI +E+VGGE D L + + GR+ GMISQ
Sbjct: 476 LGVDRVINYQNE-KIKDVLKKEFPRGADIIYESVGGEMFDLCLNALAVHGRLIVIGMISQ 534
Query: 261 YNLE---RPEGVKNLF-YIVTKRLRMEGFLVFDFYDRYYQFEDEMARYLKEGKVAYVEDV 316
Y E +P L I+ K + GF + + + D++ GK+ D
Sbjct: 535 YQGEHGWKPRNYTGLCDKILAKSQTVAGFFLIQYAHLWQDHLDKLFDLYASGKLKVSLDP 594
Query: 317 VE--GLDAAPAALIKLFTGRNVGKQLVAI 343
+ G+ +AP A+ L +G++VGK +V I
Sbjct: 595 KKFVGVASAPDAVEYLHSGKSVGKVVVCI 623
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,556,800
Number of extensions: 492059
Number of successful extensions: 1027
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1014
Number of HSP's successfully gapped: 12
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)