Os09g0459800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ARP protein.
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Os09g0459800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ARP protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.2 | 0.258 | 11 | -0.0975 | 0.466 | 0.44 | 0.0538 | -0.563 | 0.00147 | 18.4 | 20.6 | 967 | -- | -- |
| 31.18 | 0.26 | 11 | -0.0259 | 0.48 | 0.459 | -0.0182 | -- | 0.0345 | 18.4 | 20.6 | 1019 | -- | -- |
| 30.21 | 0.256 | 11 | -0.0977 | 0.466 | 0.441 | -- | -0.559 | 0.00149 | 18.4 | 20.6 | 967 | -- | -- |
| 30.89 | 0.259 | 11 | 0.0179 | 0.482 | 0.534 | -- | -- | 0.0423 | 18.6 | 19.7 | 973 | -- | -- |
| 40.91 | 0.298 | 11 | -0.105 | -- | 0.477 | -- | -0.515 | -0.0148 | -- | 20.59 | 795 | -- | -- |
| 37.93 | 0.289 | 10.9 | 0.207 | 0.48 | -- | -0.00639 | -- | 0.138 | 18.9 | -- | -- | -- | -- |
| 37.93 | 0.288 | 10.9 | 0.207 | 0.48 | -- | -- | -- | 0.138 | 18.9 | -- | -- | -- | -- |
| 41.37 | 0.3 | 11 | -0.0376 | -- | 0.631 | -- | -- | 0.0156 | -- | 19.52 | 801 | -- | -- |
| 30.78 | 0.258 | 11 | -- | 0.476 | 0.556 | -- | -- | 0.0429 | 18.4 | 19.6 | 969 | -- | -- |
| 50.03 | 0.331 | 10.9 | 0.197 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 39.06 | 0.292 | 11 | -- | 0.478 | -- | -- | -- | 0.115 | 19 | -- | -- | -- | -- |
| 41.4 | 0.3 | 11 | -- | -- | 0.605 | -- | -- | 0.0212 | -- | 19.69 | 801 | -- | -- |
| 51.06 | 0.334 | 10.9 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 5 | 25.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 9 | 25.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 28 | 26.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 33 | 26.38 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 66 | 26.63 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 70 | 26.65 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 75 | 26.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 96 | 26.84 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 7 |
| 114 | 26.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 120 | 26.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 123 | 26.97 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 126 | 26.99 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 149 | 27.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 239 | 27.43 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 13 |
| 272 | 27.54 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 315 | 27.68 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 334 | 27.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 365 | 27.85 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 386 | 27.91 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 416 | 28.00 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 422 | 28.02 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 692 | 28.77 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 887 | 29.34 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |