Os06g0602900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alcohol dehydrogenase superfamily, zinc-containing protein.
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Os06g0602900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alcohol dehydrogenase superfamily, zinc-containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.01 | 0.51 | 3.14 | -0.985 | 0.133 | 87.7 | -0.69 | -370 | 0.141 | 10.2 | 80.15 | 89 | 23.9 | 2.98 |
| 145.25 | 0.566 | 2.91 | -0.0628 | 0.14 | 1.32 | -0.867 | -- | 0.102 | 7.68 | 82.77 | 37 | 24 | 3.51 |
| 119.89 | 0.51 | 3.14 | -1.01 | 0.136 | 87.8 | -- | -370 | 0.139 | 10.3 | 80.15 | 89 | 23.9 | 2.98 |
| 144.26 | 0.563 | 2.91 | -0.0697 | 0.137 | 2.14 | -- | -- | 0.108 | 8.87 | 85.67 | 45 | 0.0667 | 3.47 |
| 121.03 | 0.512 | 3.14 | -1.02 | -- | 87.4 | -- | -368 | 0.14 | -- | 80.15 | 89 | 23.9 | 2.98 |
| 147.75 | 0.57 | 2.91 | -0.0545 | 0.135 | -- | -0.886 | -- | 0.0949 | 7.6 | -- | -- | -- | -- |
| 149.94 | 0.573 | 2.91 | -0.0755 | 0.135 | -- | -- | -- | 0.0966 | 8.03 | -- | -- | -- | -- |
| 142.96 | 0.557 | 2.92 | -0.0934 | -- | 1.73 | -- | -- | 0.0665 | -- | 90.17 | 69 | 1.18 | 2.77 |
| 139.61 | 0.55 | 2.9 | -- | 0.2 | 2.09 | -- | -- | 0.111 | 10.8 | 87.08 | 74 | 1.78 | 1.2 |
| 150.93 | 0.574 | 2.92 | -0.0742 | -- | -- | -- | -- | 0.0983 | -- | -- | -- | -- | -- |
| 150.09 | 0.573 | 2.91 | -- | 0.134 | -- | -- | -- | 0.105 | 8.07 | -- | -- | -- | -- |
| 140.27 | 0.552 | 2.9 | -- | -- | 2.26 | -- | -- | 0.119 | -- | 87.35 | 70 | 1.82 | 1.15 |
| 151.08 | 0.574 | 2.91 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.24 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 2 | 120.27 | humidity | 80.0 | 90 | < th | dose independent | rect. | 24 | 3 |
| 19 | 122.67 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 22 | 125.89 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 2 |
| 54 | 129.92 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 55 | 130.07 | humidity | 80.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 59 | 130.07 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 76 | 131.87 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 78 | 132.30 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 94 | 134.33 | humidity | 90.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 99 | 134.54 | humidity | 60.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 101 | 134.58 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 114 | 134.93 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 124 | 135.14 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 10 |
| 127 | 135.22 | temperature | 20.0 | 30 | < th | dose independent | rect. | 24 | 5 |
| 129 | 135.26 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 145 | 135.58 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 154 | 135.69 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 158 | 135.72 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 185 | 136.11 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 4 |
| 190 | 136.19 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 218 | 136.40 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 1 | 3 |
| 305 | 137.07 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 323 | 137.19 | humidity | 80.0 | 720 | < th | dose independent | rect. | 1 | 4 |
| 467 | 137.54 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 19 | 5 |
| 495 | 137.61 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 19 | 5 |
| 514 | 137.67 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 534 | 137.71 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 19 | 2 |
| 536 | 137.71 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 3 |
| 540 | 137.71 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 19 | 2 |
| 542 | 137.71 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 3 |
| 565 | 137.76 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 1 |
| 575 | 137.76 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 598 | 137.82 | humidity | 90.0 | 270 | < th | dose independent | sin | 8 | NA |
| 684 | 138.05 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 2 | 6 |
| 699 | 138.11 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 8 | 3 |
| 720 | 138.18 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 727 | 138.21 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 744 | 138.25 | humidity | 70.0 | 90 | < th | dose independent | rect. | 8 | 3 |
| 757 | 138.29 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 761 | 138.30 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 10 |
| 832 | 138.46 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 9 | 2 |
| 882 | 138.59 | humidity | 80.0 | 270 | > th | dose dependent | no | NA | NA |
| 969 | 138.77 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 1 | 3 |
| 990 | 138.80 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 993 | 138.81 | humidity | 80.0 | 270 | > th | dose independent | sin | 8 | NA |
| 999 | 138.82 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 1 |