BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0602900 Os06g0602900|J090097J02
(241 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0602900 Alcohol dehydrogenase superfamily, zinc-contai... 440 e-124
Os04g0497000 Similar to Allyl alcohol dehydrogenase 129 2e-30
Os12g0226900 Similar to Allyl alcohol dehydrogenase 119 2e-27
Os01g0891300 Similar to Allyl alcohol dehydrogenase 115 4e-26
Os12g0226700 Similar to Allyl alcohol dehydrogenase 113 1e-25
Os11g0255500 Similar to Allyl alcohol dehydrogenase 110 1e-24
Os12g0226300 Alcohol dehydrogenase superfamily, zinc-contai... 70 2e-12
>Os06g0602900 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 241
Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/241 (90%), Positives = 218/241 (90%)
Query: 1 MEVESRYVAVRHHVEGLPSEDDFEVKAARVRWWPESGEVLVRNLYLSVDPYQLNRMKRRS 60
MEVESRYVAVRHHVEGLPSEDDFEVKAARVRWWPESGEVLVRNLYLSVDPYQLNRMKRRS
Sbjct: 1 MEVESRYVAVRHHVEGLPSEDDFEVKAARVRWWPESGEVLVRNLYLSVDPYQLNRMKRRS 60
Query: 61 ASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPSPGVLMSKL 120
ASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPSPGVLMSKL
Sbjct: 61 ASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPSPGVLMSKL 120
Query: 121 AASDDLPLSHHLSALGEXXXXXXXXXXXXXMQFLLICLSVSVAPGGDRWIEHVAGTSGMT 180
AASDDLPLSHHLSALGE MQFLLICLSVSVAPGGDRWIEHVAGTSGMT
Sbjct: 121 AASDDLPLSHHLSALGERRRRRRRAPRHARMQFLLICLSVSVAPGGDRWIEHVAGTSGMT 180
Query: 181 AYAGLYEVGRPEAGEKVFXXXXXXXXXXLVGQFAKLAGCYVVGCAGTNAKVSQNTQAHCT 240
AYAGLYEVGRPEAGEKVF LVGQFAKLAGCYVVGCAGTNAKVSQNTQAHCT
Sbjct: 181 AYAGLYEVGRPEAGEKVFVSAASGSVGSLVGQFAKLAGCYVVGCAGTNAKVSQNTQAHCT 240
Query: 241 K 241
K
Sbjct: 241 K 241
>Os04g0497000 Similar to Allyl alcohol dehydrogenase
Length = 345
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 116/240 (48%), Gaps = 56/240 (23%)
Query: 1 MEVESRYVAVRHHVEGLPSEDDFEVKAA------RVRWWPE--SGEVLVRNLYLSVDPYQ 52
M ++ + +R+HV G P E D E+ AA RV PE G VLV+NLYLS DPY
Sbjct: 1 MAATNKKIVLRNHVTGFPKESDMELVAATGAAPSRV---PEGTDGAVLVKNLYLSCDPYM 57
Query: 53 LNRMKRRSASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFR-P 111
RM S+ VD V GE I YG G+VV S+ +K GD+V G+ GWE+Y+L + P
Sbjct: 58 RGRMSSHDGSY--VDAFVVGEAITGYGVGKVVDSSHPGFKAGDLVWGMTGWEEYSLIKDP 115
Query: 112 SPGVLMSKLAASDDLPLSHHLSALGEXXXXXXXXXXXXXMQFLLICLSVSVAPGGDRWIE 171
S + + DLPLS++ L
Sbjct: 116 SRALFAIR---HPDLPLSYYTGLL------------------------------------ 136
Query: 172 HVAGTSGMTAYAGLYEVGRPEAGEKVFXXXXXXXXXXLVGQFAKLAGCYVVGCAGTNAKV 231
G +G TAY G +E+ P GE+V+ LVGQFAKL GCYVVG AG++ KV
Sbjct: 137 ---GMAGFTAYVGFHEICAPREGERVYVSAASGAVGQLVGQFAKLMGCYVVGSAGSDDKV 193
>Os12g0226900 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 110/232 (47%), Gaps = 47/232 (20%)
Query: 5 SRYVAVRHHVEGLPSEDDFEVKAARVRWW---PESGE-VLVRNLYLSVDPYQLNRMKRRS 60
++ V ++ +V GL SEDD EV V P E V+V+NLY+S DPY NRM R
Sbjct: 7 NKRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRNRMTRHE 66
Query: 61 ASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPSPGVLMSKL 120
D +PGE + +G V++S ++K GD+V G+ GWE+YT+ +P L
Sbjct: 67 VPSYVSD-FIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVIN-NPESLFR-- 122
Query: 121 AASDDLPLSHHLSALGEXXXXXXXXXXXXXMQFLLICLSVSVAPGGDRWIEHVAGTSGMT 180
LPLS++ L G G+T
Sbjct: 123 INHPKLPLSYYTGIL---------------------------------------GMPGLT 143
Query: 181 AYAGLYEVGRPEAGEKVFXXXXXXXXXXLVGQFAKLAGCYVVGCAGTNAKVS 232
AYAG +EV +P+ GE VF +VGQ AK+ GCYVVG AG++ KVS
Sbjct: 144 AYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYVVGSAGSDEKVS 195
>Os01g0891300 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 110/239 (46%), Gaps = 59/239 (24%)
Query: 4 ESRYVAVRHHVEGLPSEDDFEVK------AARVRWWPESGE----VLVRNLYLSVDPYQL 53
+R V +R ++ G P +D V A RV PE+ VLV+NLYLS DPY
Sbjct: 11 RNRKVVLREYIAGRPPREDDMVLVDGGTVALRV---PEAAAPAPAVLVKNLYLSCDPYMR 67
Query: 54 NRMKRRSASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLF-RPS 112
RM+ S+ + PG I+ G VV S + GD+V+G+ GWE+Y+L RP
Sbjct: 68 GRMRDFHGSY--IPPFKPGSVIEGLGVARVVDSTHPGFSAGDIVSGMTGWEEYSLIDRPE 125
Query: 113 PGVLMSKLAASDDLPLSHHLSALGEXXXXXXXXXXXXXMQFLLICLSVSVAPGGDRWIEH 172
+SK+ S D+PLS+HL L
Sbjct: 126 Q---LSKIQQS-DIPLSYHLGLL------------------------------------- 144
Query: 173 VAGTSGMTAYAGLYEVGRPEAGEKVFXXXXXXXXXXLVGQFAKLAGCYVVGCAGTNAKV 231
G G TAYAG YE+ P+ GE VF +VGQ AKL GCYVVG AGTN KV
Sbjct: 145 --GMPGFTAYAGFYEICSPKKGEFVFVSAASGAVGQIVGQLAKLHGCYVVGSAGTNQKV 201
>Os12g0226700 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 46/233 (19%)
Query: 3 VESRYVAVRHHVEGLPSEDDFEV---KAARVRWWPESGEVLVRNLYLSVDPYQLNRMKRR 59
V ++ V ++ +V GL SEDD EV +A + S V+V+NLY+S DPY NRM
Sbjct: 6 VSNKRVILKRYVTGLLSEDDMEVVTVEAPPLDVPTGSKGVVVKNLYVSCDPYMRNRMTHH 65
Query: 60 SASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPSPGVLMSK 119
D VPGE ++ +G +V++S ++K GD+V G+ GWE+YT+ +P L
Sbjct: 66 ELPSYIPD-FVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVIN-NPESLFK- 122
Query: 120 LAASDDLPLSHHLSALGEXXXXXXXXXXXXXMQFLLICLSVSVAPGGDRWIEHVAGTSGM 179
+LPLS++ L G G+
Sbjct: 123 -INHPELPLSYYTGIL---------------------------------------GMPGL 142
Query: 180 TAYAGLYEVGRPEAGEKVFXXXXXXXXXXLVGQFAKLAGCYVVGCAGTNAKVS 232
TAYAG ++V +P+ GE VF +VGQ AK+ GCYV+G AG + KV+
Sbjct: 143 TAYAGFFDVPKPKKGEYVFISGASGAVGQVVGQLAKITGCYVIGSAGYDEKVN 195
>Os11g0255500 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 112/236 (47%), Gaps = 48/236 (20%)
Query: 3 VESRYVAVRHHVE-GLPSEDDFEVKAA----RVRWWPESGEVLVRNLYLSVDPYQLNRM- 56
V +R V +R +V G P+ DD EV ++ RV + V+V+N+YLS DP+ RM
Sbjct: 14 VRNRKVVLRRYVTAGYPTVDDMEVVSSTMMPRVPLGTMAPAVMVKNIYLSCDPWMRGRMT 73
Query: 57 KRRSASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPSPGVL 116
K A+ + V GE + +G +VV S + GD+V G+ GWE+Y+L P L
Sbjct: 74 KHDDATAEIAEDFVLGEAMVNFGVSKVVDSTHPVFAAGDLVWGLCGWEEYSLI-TQPETL 132
Query: 117 MSKLAASDDLPLSHHLSALGEXXXXXXXXXXXXXMQFLLICLSVSVAPGGDRWIEHVAGT 176
DLPLS++ L G
Sbjct: 133 HK--INHPDLPLSYYTGVL---------------------------------------GV 151
Query: 177 SGMTAYAGLYEVGRPEAGEKVFXXXXXXXXXXLVGQFAKLAGCYVVGCAGTNAKVS 232
+G+TAYA +EVG+P+ GE VF +VGQ AK+AGCYVVG AG++ KV+
Sbjct: 152 TGLTAYAAFFEVGKPKKGETVFVSAASGAVGQIVGQLAKIAGCYVVGSAGSDEKVT 207
>Os12g0226300 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 149
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 36 SGEVLVRNLYLSVDPYQLNRMKRRSASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGD 95
S VLV+NLY+S DPY NRM R D VPGE + ++G +V++S ++K GD
Sbjct: 45 SSAVLVKNLYISCDPYLRNRMIRHEVPTYISD-FVPGEVVTSHGVMKVISSGHLDFKAGD 103
Query: 96 VVAGVLGWEDYTLFRPSPGVLMSKLAASDDLPLSHHLSALG 136
+V G+ GWE+YTL +P L + PLS++ L
Sbjct: 104 LVWGMTGWEEYTLIN-NPESLFK--INYPEFPLSNYTGVLA 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,905,793
Number of extensions: 304023
Number of successful extensions: 653
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 10
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)