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Os04g0497000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Allyl alcohol dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0338) R2 : 0.483
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.6 (0.0891) R2dC : 0.371 R2C : 0.409
β3 : 2.54 (0.321) R2dE : 0.0731 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.126 (0.0714) R2dN8 : 0.00459 R2N8 : -0.00295
σ : 0.634
deviance : 185.3
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_____
C
peak time of C : 17.6
E
wheather : wind
threshold : 8.722
memory length : 535
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.94 0.635 10.9 0.0436 1.64 4.08 -0.692 8.28 0.117 17.4 9.05 695 -- --
186.67 0.636 10.9 -0.179 1.56 3.04 -0.705 -- 0.143 17.5 8.7 488 -- --
184.06 0.632 11 0.0687 1.65 4.18 -- 8.58 0.112 17.5 9.083 695 -- --
185.69 0.635 10.9 -0.0695 1.58 2.78 -- -- 0.118 17.6 8.8 488 -- --
293.64 0.798 11 0.332 -- 5.03 -- 9.24 0.0879 -- 7.1 319 -- --
207.61 0.675 10.9 -0.254 1.69 -- -0.79 -- 0.0441 17.6 -- -- -- --
209.02 0.677 10.9 -0.251 1.68 -- -- -- 0.0402 17.7 -- -- -- --
243.79 0.727 10.9 -0.0345 -- 1.28 -- -- 0.131 -- 3.639 71 -- --
185.3 0.634 10.9 -- 1.6 2.54 -- -- 0.126 17.6 8.722 535 -- --
356 0.882 10.9 -0.304 -- -- -- -- 0.000246 -- -- -- -- --
210.68 0.679 10.9 -- 1.69 -- -- -- 0.0682 17.7 -- -- -- --
235.78 0.715 10.9 -- -- 1.4 -- -- 0.012 -- 3.657 145 -- --
358.45 0.884 10.9 -- -- -- -- -- 0.034 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.82 wind 7 90 < th dose independent sin 13 NA
4 172.82 wind 9 270 < th dose independent sin 10 NA
5 172.88 wind 9 720 < th dose independent rect. 9 16
8 174.34 wind 9 720 < th dose independent sin 2 NA
9 174.50 wind 9 720 < th dose independent sin 19 NA
15 174.95 wind 9 720 < th dose independent rect. 7 23
23 175.64 wind 9 720 < th dose independent rect. 11 9
24 175.93 wind 9 14400 < th dose independent rect. 6 4
27 176.23 radiation 1 4320 < th dose independent rect. 18 13
28 176.24 radiation 1 4320 > th dose independent rect. 18 13
31 176.44 radiation 1 4320 < th dose dependent rect. 19 11
32 176.48 radiation 1 4320 < th dose dependent rect. 21 9
35 176.53 wind 9 720 < th dose independent rect. 13 16
37 176.55 radiation 1 4320 < th dose dependent rect. 1 5
38 176.56 radiation 1 4320 < th dose dependent rect. 3 3
50 177.18 temperature 10 720 > th dose dependent rect. 5 4
52 177.21 temperature 10 270 > th dose dependent rect. 4 13
54 177.28 wind 9 720 < th dose independent rect. 13 8
57 177.36 wind 5 90 > th dose dependent sin 14 NA
59 177.43 wind 9 14400 > th dose independent rect. 9 1
110 178.58 wind 7 270 < th dose independent rect. 17 11
118 178.98 temperature 10 720 > th dose dependent rect. 1 8
130 179.08 wind 5 90 < th dose independent rect. 9 14
133 179.13 wind 5 90 > th dose dependent rect. 14 19
148 179.38 wind 7 90 > th dose independent sin 13 NA
156 179.41 wind 9 720 > th dose dependent rect. 20 21
169 179.57 wind 9 90 < th dose dependent sin 16 NA
183 179.64 radiation 1 4320 < th dose dependent sin 9 NA
189 179.67 wind 9 90 < th dose dependent sin 21 NA
202 179.83 wind 9 720 > th dose dependent rect. 11 6
214 179.96 temperature 10 43200 > th dose independent rect. 10 7
215 179.96 wind 7 720 < th dose independent rect. 10 19
217 179.97 wind 5 90 < th dose independent sin 21 NA
225 180.02 wind 7 90 < th dose dependent rect. 9 7
227 180.03 wind 5 90 < th dose independent rect. 17 23
230 180.05 wind 5 90 < th dose independent rect. 9 7
235 180.06 wind 7 720 < th dose independent rect. 17 21
257 180.19 wind 9 720 > th dose independent rect. 19 22
262 180.21 wind 9 720 > th dose dependent rect. 1 16
313 180.58 wind 7 90 < th dose dependent rect. 9 12
321 180.70 radiation 1 4320 < th dose independent sin 10 NA
322 180.72 wind 9 720 > th dose independent rect. 11 6
329 180.75 wind 5 90 < th dose dependent rect. 9 10
332 180.77 temperature 10 720 > th dose dependent rect. 21 14
335 180.80 radiation 1 4320 > th dose independent sin 10 NA
340 180.83 radiation 10 720 < th dose independent rect. 21 21
345 180.85 wind 9 720 > th dose dependent rect. 15 1
353 180.90 radiation 30 14400 > th dose independent rect. 7 1
381 180.98 temperature 10 720 > th dose dependent sin 6 NA
387 181.03 wind 9 720 < th dose independent rect. 15 23
397 181.08 wind 9 720 > th dose independent rect. 1 16
424 181.20 temperature 20 720 > th dose independent rect. 5 4
428 181.22 wind 9 43200 < th dose independent rect. 24 3
434 181.25 temperature 20 720 > th dose independent rect. 5 6
435 181.25 wind 7 90 > th dose independent rect. 14 20
440 181.28 radiation 30 43200 > th dose dependent rect. 7 1
479 181.35 radiation 1 4320 < th dose independent rect. 5 2
483 181.37 wind 5 90 > th dose independent rect. 11 23
484 181.38 radiation 1 4320 > th dose independent rect. 5 4
485 181.38 radiation 1 4320 < th dose independent rect. 5 4
491 181.41 wind 9 43200 > th dose dependent rect. 24 2
494 181.42 wind 3 43200 > th dose independent rect. 13 1
499 181.45 radiation 1 4320 > th dose independent rect. 5 2
502 181.47 wind 9 720 > th dose independent rect. 15 1
506 181.49 wind 7 43200 > th dose independent rect. 1 1
511 181.51 wind 7 90 > th dose independent rect. 14 18
528 181.57 wind 5 90 < th dose independent rect. 8 23
534 181.60 wind 5 90 < th dose independent rect. 9 12
537 181.62 atmosphere 1015 43200 < th dose independent rect. 18 1
545 181.65 atmosphere 1015 43200 < th dose independent rect. 14 5
546 181.65 wind 7 90 > th dose independent rect. 14 15
556 181.69 atmosphere 1015 43200 > th dose independent rect. 14 1
557 181.69 radiation 40 14400 < th dose independent rect. 4 4
562 181.70 radiation 40 14400 < th dose independent rect. 7 1
564 181.70 atmosphere 1015 43200 > th dose independent rect. 13 6
589 181.75 wind 7 90 < th dose dependent rect. 9 14
627 181.82 radiation 1 4320 < th dose independent rect. 21 12
632 181.83 wind 7 43200 < th dose independent rect. 1 1
649 181.87 radiation 10 720 < th dose independent rect. 3 15
652 181.88 wind 1 43200 > th dose independent rect. 2 1
653 181.88 wind 3 43200 < th dose independent rect. 13 1
659 181.89 radiation 1 4320 < th dose independent rect. 1 8
664 181.91 radiation 1 4320 < th dose independent rect. 3 6
691 181.97 temperature 15 43200 < th dose dependent rect. 3 4
696 181.98 temperature 15 43200 < th dose dependent rect. 5 1
767 182.09 radiation 10 720 < th dose independent rect. 1 17
778 182.12 wind 5 43200 < th dose dependent rect. 13 1
798 182.15 temperature 15 43200 < th dose independent rect. 6 1
800 182.15 radiation 40 14400 < th dose independent rect. 17 15
816 182.17 wind 3 90 < th dose independent rect. 9 10
863 182.25 temperature 15 43200 < th dose independent rect. 5 3
880 182.27 temperature 20 30 > th dose dependent rect. 1 21
896 182.29 wind 3 43200 < th dose dependent rect. 11 1
908 182.31 atmosphere 1015 43200 > th dose dependent rect. 13 2
942 182.34 atmosphere 1005 14400 > th dose dependent rect. 17 1
955 182.35 temperature 15 43200 < th dose dependent sin 4 NA
963 182.36 radiation 1 43200 > th dose dependent rect. 18 11