BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0226700 Os12g0226700|AK070393
(346 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0226700 Similar to Allyl alcohol dehydrogenase 644 0.0
Os12g0226900 Similar to Allyl alcohol dehydrogenase 559 e-159
Os04g0497000 Similar to Allyl alcohol dehydrogenase 409 e-114
Os11g0255500 Similar to Allyl alcohol dehydrogenase 391 e-109
Os01g0891300 Similar to Allyl alcohol dehydrogenase 360 1e-99
Os12g0226400 Similar to Quinone oxidoreductase-like protein 269 3e-72
Os12g0226300 Alcohol dehydrogenase superfamily, zinc-contai... 218 7e-57
Os06g0602900 Alcohol dehydrogenase superfamily, zinc-contai... 108 4e-24
AK060364 89 4e-18
Os09g0459800 Similar to ARP protein 83 3e-16
Os12g0225900 Alcohol dehydrogenase superfamily, zinc-contai... 76 3e-14
>Os12g0226700 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/346 (92%), Positives = 320/346 (92%)
Query: 1 MAAATVSNKRVILKRYVTGLLSEDDMEVVTVEAPPLDVPTGSKGVVVKNLYVSCDPYMRN 60
MAAATVSNKRVILKRYVTGLLSEDDMEVVTVEAPPLDVPTGSKGVVVKNLYVSCDPYMRN
Sbjct: 1 MAAATVSNKRVILKRYVTGLLSEDDMEVVTVEAPPLDVPTGSKGVVVKNLYVSCDPYMRN 60
Query: 61 RMTHHELPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINNPESL 120
RMTHHELPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINNPESL
Sbjct: 61 RMTHHELPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINNPESL 120
Query: 121 FKINHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGEYVFIXXXXXXXXXXXXXLAKIT 180
FKINHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGEYVFI LAKIT
Sbjct: 121 FKINHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGEYVFISGASGAVGQVVGQLAKIT 180
Query: 181 GCYVIGSAGYDEKVNLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLD 240
GCYVIGSAGYDEKVNLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLD
Sbjct: 181 GCYVIGSAGYDEKVNLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLD 240
Query: 241 AVLPNMSLGGRIVACGMISQYNLEQPEGVRNLYYIVTKRLRMEGFHVXXXXXXXXXXXXX 300
AVLPNMSLGGRIVACGMISQYNLEQPEGVRNLYYIVTKRLRMEGFHV
Sbjct: 241 AVLPNMSLGGRIVACGMISQYNLEQPEGVRNLYYIVTKRLRMEGFHVFDYYDRYYRFEEE 300
Query: 301 MAGYLKEEKVSYVEDVVEGLDTAPAALIRLFTGRSVGKQLVAVARE 346
MAGYLKEEKVSYVEDVVEGLDTAPAALIRLFTGRSVGKQLVAVARE
Sbjct: 301 MAGYLKEEKVSYVEDVVEGLDTAPAALIRLFTGRSVGKQLVAVARE 346
>Os12g0226900 Similar to Allyl alcohol dehydrogenase
Length = 346
Score = 559 bits (1440), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/345 (79%), Positives = 297/345 (86%), Gaps = 1/345 (0%)
Query: 3 AATVSNKRVILKRYVTGLLSEDDMEVVTVEAPPLDV-PTGSKGVVVKNLYVSCDPYMRNR 61
AAT SNKRVILKRYVTGLLSEDDMEVVT E PPL V P GS+ VVVKNLYVSCDPYMRNR
Sbjct: 2 AATASNKRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRNR 61
Query: 62 MTHHELPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINNPESLF 121
MT HE+PSY+ DF+PGEVL NFGVM+VISSGH DFKAGDLVWG+TGWEEYTVINNPESLF
Sbjct: 62 MTRHEVPSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPESLF 121
Query: 122 KINHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGEYVFIXXXXXXXXXXXXXLAKITG 181
+INHP+LPLSYYTGILGMPGLTAYAGFF+V KPKKGEYVFI LAKI G
Sbjct: 122 RINHPKLPLSYYTGILGMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIG 181
Query: 182 CYVIGSAGYDEKVNLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLDA 241
CYV+GSAG DEKV+LLK+KFGF+DAFNYKKE DLEAALRRYFPEGIDIY+ENVGG+ LDA
Sbjct: 182 CYVVGSAGSDEKVSLLKTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLDA 241
Query: 242 VLPNMSLGGRIVACGMISQYNLEQPEGVRNLYYIVTKRLRMEGFHVXXXXXXXXXXXXXM 301
VLPNM LGGRI ACGMISQYNLE+PEGV+NL+YIVTKRLRMEGF V M
Sbjct: 242 VLPNMRLGGRIAACGMISQYNLERPEGVKNLFYIVTKRLRMEGFLVFDFYDRYYQFEDEM 301
Query: 302 AGYLKEEKVSYVEDVVEGLDTAPAALIRLFTGRSVGKQLVAVARE 346
A YLKE KV+YVEDVVEGLD APAALI+LFTGR+VGKQLVA+ARE
Sbjct: 302 ARYLKEGKVAYVEDVVEGLDAAPAALIKLFTGRNVGKQLVAIARE 346
>Os04g0497000 Similar to Allyl alcohol dehydrogenase
Length = 345
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/345 (59%), Positives = 249/345 (72%), Gaps = 4/345 (1%)
Query: 5 TVSNKRVILKRYVTGLLSEDDMEVVTVE-APPLDVPTGSKG-VVVKNLYVSCDPYMRNRM 62
+NK+++L+ +VTG E DME+V A P VP G+ G V+VKNLY+SCDPYMR RM
Sbjct: 2 AATNKKIVLRNHVTGFPKESDMELVAATGAAPSRVPEGTDGAVLVKNLYLSCDPYMRGRM 61
Query: 63 THHELPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINNP-ESLF 121
+ H+ SY+ FV GE + +GV KV+ S H FKAGDLVWGMTGWEEY++I +P +LF
Sbjct: 62 SSHD-GSYVDAFVVGEAITGYGVGKVVDSSHPGFKAGDLVWGMTGWEEYSLIKDPSRALF 120
Query: 122 KINHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGEYVFIXXXXXXXXXXXXXLAKITG 181
I HP+LPLSYYTG+LGM G TAY GF ++ P++GE V++ AK+ G
Sbjct: 121 AIRHPDLPLSYYTGLLGMAGFTAYVGFHEICAPREGERVYVSAASGAVGQLVGQFAKLMG 180
Query: 182 CYVIGSAGYDEKVNLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLDA 241
CYV+GSAG D+KV LL+ KFGFDDAFNYKKE DL AAL+R FPEGIDIY+ENVGG MLDA
Sbjct: 181 CYVVGSAGSDDKVRLLREKFGFDDAFNYKKESDLSAALKRCFPEGIDIYFENVGGAMLDA 240
Query: 242 VLPNMSLGGRIVACGMISQYNLEQPEGVRNLYYIVTKRLRMEGFHVXXXXXXXXXXXXXM 301
VL NM + GR+ ACGMISQYNLE P+ V NL IVTKRLR+EGF V
Sbjct: 241 VLLNMRVRGRVAACGMISQYNLEHPDPVHNLTAIVTKRLRIEGFIVSDHYARYREYEEKA 300
Query: 302 AGYLKEEKVSYVEDVVEGLDTAPAALIRLFTGRSVGKQLVAVARE 346
A Y+KE K++YVEDV EGL+ APAALI LF+GR+VGKQ+V VARE
Sbjct: 301 ARYVKEGKIAYVEDVAEGLENAPAALIGLFSGRNVGKQVVVVARE 345
>Os11g0255500 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/347 (58%), Positives = 248/347 (71%), Gaps = 7/347 (2%)
Query: 6 VSNKRVILKRYVT-GLLSEDDMEVVTVEAPPLDVPTGSKG--VVVKNLYVSCDPYMRNRM 62
V N++V+L+RYVT G + DDMEVV+ P VP G+ V+VKN+Y+SCDP+MR RM
Sbjct: 14 VRNRKVVLRRYVTAGYPTVDDMEVVSSTMMP-RVPLGTMAPAVMVKNIYLSCDPWMRGRM 72
Query: 63 THHE--LPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINNPESL 120
T H+ DFV GE + NFGV KV+ S H F AGDLVWG+ GWEEY++I PE+L
Sbjct: 73 TKHDDATAEIAEDFVLGEAMVNFGVSKVVDSTHPVFAAGDLVWGLCGWEEYSLITQPETL 132
Query: 121 FKINHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGEYVFIXXXXXXXXXXXXXLAKIT 180
KINHP+LPLSYYTG+LG+ GLTAYA FF+V KPKKGE VF+ LAKI
Sbjct: 133 HKINHPDLPLSYYTGVLGVTGLTAYAAFFEVGKPKKGETVFVSAASGAVGQIVGQLAKIA 192
Query: 181 GCYVIGSAGYDEKVNLLKSKFGFDDAFNYKKE-QDLEAALRRYFPEGIDIYYENVGGKML 239
GCYV+GSAG DEKV LLK+KFGF DAFNYKKE DL ALRR FP+GIDIY++NVGG L
Sbjct: 193 GCYVVGSAGSDEKVTLLKTKFGFHDAFNYKKESNDLTGALRRCFPDGIDIYFDNVGGATL 252
Query: 240 DAVLPNMSLGGRIVACGMISQYNLEQPEGVRNLYYIVTKRLRMEGFHVXXXXXXXXXXXX 299
DA L NM GGR+V CGMISQYNL++PEGV N+ I++K +R+EGF V
Sbjct: 253 DAALVNMRRGGRVVVCGMISQYNLQEPEGVHNVIQILSKTIRVEGFAVFNHFGLYPMFED 312
Query: 300 XMAGYLKEEKVSYVEDVVEGLDTAPAALIRLFTGRSVGKQLVAVARE 346
MA YLKE KV+ ++DVV+G++ A ALI +F+GR+VGK LVAVA E
Sbjct: 313 EMARYLKEGKVTVLQDVVKGIEKASEALIGMFSGRNVGKLLVAVADE 359
>Os01g0891300 Similar to Allyl alcohol dehydrogenase
Length = 359
Score = 360 bits (923), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 236/349 (67%), Gaps = 5/349 (1%)
Query: 2 AAATVSNKRVILKRYVTGLL-SEDDMEVVTVEAPPLDVP---TGSKGVVVKNLYVSCDPY 57
AA N++V+L+ Y+ G EDDM +V L VP + V+VKNLY+SCDPY
Sbjct: 6 AAPMARNRKVVLREYIAGRPPREDDMVLVDGGTVALRVPEAAAPAPAVLVKNLYLSCDPY 65
Query: 58 MRNRMTHHELPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINNP 117
MR RM SYIP F PG V+E GV +V+ S H F AGD+V GMTGWEEY++I+ P
Sbjct: 66 MRGRMRDFH-GSYIPPFKPGSVIEGLGVARVVDSTHPGFSAGDIVSGMTGWEEYSLIDRP 124
Query: 118 ESLFKINHPELPLSYYTGILGMPGLTAYAGFFDVPKPKKGEYVFIXXXXXXXXXXXXXLA 177
E L KI ++PLSY+ G+LGMPG TAYAGF+++ PKKGE+VF+ LA
Sbjct: 125 EQLSKIQQSDIPLSYHLGLLGMPGFTAYAGFYEICSPKKGEFVFVSAASGAVGQIVGQLA 184
Query: 178 KITGCYVIGSAGYDEKVNLLKSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGK 237
K+ GCYV+GSAG ++KV LLK KFGFD AFNYK+E DL AAL+RYFPEGIDIY+ENVGG
Sbjct: 185 KLHGCYVVGSAGTNQKVELLKGKFGFDAAFNYKEEPDLTAALKRYFPEGIDIYFENVGGP 244
Query: 238 MLDAVLPNMSLGGRIVACGMISQYNLEQPEGVRNLYYIVTKRLRMEGFHVXXXXXXXXXX 297
MLDAVL NM GRI CGM+SQ L P G+ N++ +V KR+RM+GF
Sbjct: 245 MLDAVLLNMRTHGRIAVCGMVSQNALTDPVGIHNIFCLVPKRIRMQGFIQSDHLHMFPQF 304
Query: 298 XXXMAGYLKEEKVSYVEDVVEGLDTAPAALIRLFTGRSVGKQLVAVARE 346
MA + ++ K+ YVED+ GL+ APAAL+ LF+G++VGK++V V++E
Sbjct: 305 VSDMAKHYRDGKIVYVEDMSIGLENAPAALVGLFSGKNVGKKVVCVSQE 353
>Os12g0226400 Similar to Quinone oxidoreductase-like protein
Length = 204
Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 136/207 (65%), Positives = 156/207 (75%), Gaps = 8/207 (3%)
Query: 138 GMPGLTAYAGFFDVPKPKKGEYVFIXXXXXXXXXXXXXLAKITGCYVIGSAGYDEKVNLL 197
GM GLTAY GFF++ KPKK LAKI GCYV+GSAG D+KVNLL
Sbjct: 6 GMHGLTAYVGFFEMSKPKKA--------CGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLL 57
Query: 198 KSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLDAVLPNMSLGGRIVACGM 257
K+KFGFDDAFNYKKE DLEAAL+R FPEGIDI +ENVGG MLDAVLPNM LGGRI CGM
Sbjct: 58 KTKFGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGM 117
Query: 258 ISQYNLEQPEGVRNLYYIVTKRLRMEGFHVXXXXXXXXXXXXXMAGYLKEEKVSYVEDVV 317
ISQY+LE+PEGVRNL YI+TKRLRMEGF + MAGYL+E KV+Y+ED+V
Sbjct: 118 ISQYHLERPEGVRNLMYIITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLEDIV 177
Query: 318 EGLDTAPAALIRLFTGRSVGKQLVAVA 344
+GLD APAALI ++ G +VGKQLVA+A
Sbjct: 178 QGLDAAPAALIGIYNGLNVGKQLVAIA 204
>Os12g0226300 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 149
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 106/142 (74%), Positives = 118/142 (83%), Gaps = 5/142 (3%)
Query: 1 MAAATVSNKRVILKRYVT----GLLSEDDMEVVTVEAPPLDVPTGSKGVVVKNLYVSCDP 56
MA VSNKRVILKRY+T G L D+MEVVT EA PL VP GS V+VKNLY+SCDP
Sbjct: 1 MALVAVSNKRVILKRYLTACEIGQLG-DEMEVVTAEAVPLSVPAGSSAVLVKNLYISCDP 59
Query: 57 YMRNRMTHHELPSYIPDFVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVINN 116
Y+RNRM HE+P+YI DFVPGEV+ + GVMKVISSGHLDFKAGDLVWGMTGWEEYT+INN
Sbjct: 60 YLRNRMIRHEVPTYISDFVPGEVVTSHGVMKVISSGHLDFKAGDLVWGMTGWEEYTLINN 119
Query: 117 PESLFKINHPELPLSYYTGILG 138
PESLFKIN+PE PLS YTG+L
Sbjct: 120 PESLFKINYPEFPLSNYTGVLA 141
>Os06g0602900 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 241
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 110/233 (47%), Gaps = 46/233 (19%)
Query: 6 VSNKRVILKRYVTGLLSEDDMEVVTVEAPPLDVPTGSKGVVVKNLYVSCDPYMRNRMTHH 65
V ++ V ++ +V GL SEDD EV +A + S V+V+NLY+S DPY NRM
Sbjct: 3 VESRYVAVRHHVEGLPSEDDFEV---KAARVRWWPESGEVLVRNLYLSVDPYQLNRMKRR 59
Query: 66 ELPSYIPD-FVPGEVLENFGVMKVISSGHLDFKAGDLVWGMTGWEEYTVIN-NPESLFK- 122
D VPGE ++ +G +V++S ++K GD+V G+ GWE+YT+ +P L
Sbjct: 60 SASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPSPGVLMSK 119
Query: 123 -INHPELPLSYYTGIL---------------------------------------GMPGL 142
+LPLS++ L G G+
Sbjct: 120 LAASDDLPLSHHLSALGERRRRRRRAPRHARMQFLLICLSVSVAPGGDRWIEHVAGTSGM 179
Query: 143 TAYAGFFDVPKPKKGEYVFIXXXXXXXXXXXXXLAKITGCYVIGSAGYDEKVN 195
TAYAG ++V +P+ GE VF+ AK+ GCYV+G AG + KV+
Sbjct: 180 TAYAGLYEVGRPEAGEKVFVSAASGSVGSLVGQFAKLAGCYVVGCAGTNAKVS 232
>AK060364
Length = 332
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%)
Query: 37 DVPTGSKG-VVVKNLYV---SCDPYMRNRMTHHELPSYIPDFVPGEVLENFGVMKVISSG 92
++P ++G VVVKN YV + D + N + LP F G LE G + + G
Sbjct: 26 ELPAAAEGHVVVKNHYVGINATDVIITNGLYDRPLP-----FSCG--LEGVGEVVTVGEG 78
Query: 93 HLDFKAGDLV--WGMTGWEEYTVI--NNPESLFKINHPELPLSYYTGILGMPGLTAYAGF 148
+FK GD + M + EY + + I+ LP+ + G++A
Sbjct: 79 VENFKIGDAIAYQKMGAFTEYIAVPAATAHKVPAIDPSVLPVL-------VQGISAAVAL 131
Query: 149 FDVPKPKKGEYVFIXXXXXXXXXXXXXLAKITGCYVIGSAGYDEKVNLLKSKFGFDDAFN 208
V + K GE V + LAK+ G +VIG+ DEK +LK + G D N
Sbjct: 132 EQVGEMKSGETVLVTAAAGGAGQFVVQLAKLAGNHVIGTTSSDEKAEVLK-ELGCDRVIN 190
Query: 209 YKKEQDLEAALRRYFPEGIDIYYENVGGKMLDAVLPNMSLGGRIVACGMISQY 261
Y KE D++ L+ +P+G+D+ ++ VGG+ A + N+++ GR++ G IS Y
Sbjct: 191 YNKE-DIDTVLKTEYPKGVDLVFDTVGGETFKAAVQNIAVRGRLIVFGNISGY 242
>Os09g0459800 Similar to ARP protein
Length = 634
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 141 GLTAYAGFFDVPKPKKGEYVFIXXXXXXXXXXXXXLAKITGCYVIGSAGYDEKVNLLKSK 200
GLTA + G+ V + LAK+ G V+ + G K LL S
Sbjct: 417 GLTASIALEKAGQMASGQVVLVTAAAGGTGQFAVQLAKLAGNKVVATCGGKCKAALLSS- 475
Query: 201 FGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLDAVLPNMSLGGRIVACGMISQ 260
G D NY+ E+ ++ L++ FP G DI YE+VGG+M D L +++ GR++ GMISQ
Sbjct: 476 LGVDRVINYQNEK-IKDVLKKEFPRGADIIYESVGGEMFDLCLNALAVHGRLIVIGMISQ 534
Query: 261 YNLEQPEGVRNLY----YIVTKRLRMEGFHVXXXXXXXXXXXXXM-----AGYLKEEKVS 311
Y E RN I+ K + GF + + +G L KVS
Sbjct: 535 YQGEHGWKPRNYTGLCDKILAKSQTVAGFFLIQYAHLWQDHLDKLFDLYASGKL---KVS 591
Query: 312 YVEDVVEGLDTAPAALIRLFTGRSVGKQLVAV 343
G+ +AP A+ L +G+SVGK +V +
Sbjct: 592 LDPKKFVGVASAPDAVEYLHSGKSVGKVVVCI 623
>Os12g0225900 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 111
Score = 76.3 bits (186), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 128 LPLSYYTGIL---GMPGLTAYAGFFDVPKPKKGEYVFIXXXXXXXXXXXXXLAKITGCYV 184
LP+S IL G+ GLTAY GFF+V KPKKG+YVF+ LAKITGCYV
Sbjct: 3 LPVSLLYLILDNSGIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYV 62
Query: 185 IGSAGYDEKV 194
+GSAG DEKV
Sbjct: 63 VGSAGSDEKV 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.140 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,977,105
Number of extensions: 444880
Number of successful extensions: 797
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 11
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)