BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0208900 Os12g0208900|Os12g0208900
(311 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0208900 ZF-HD homeobox protein Cys/His-rich dimerisati... 329 2e-90
Os11g0243300 ZF-HD homeobox protein Cys/His-rich dimerisati... 109 3e-24
Os08g0479400 Similar to Hydroxyproline-rich glycoprotein DZ... 100 2e-21
Os09g0466400 Similar to ZF-HD homeobox protein 96 3e-20
Os03g0718500 ZF-HD homeobox protein Cys/His-rich dimerisati... 89 5e-18
Os09g0414600 Similar to ZF-HD homeobox protein (Fragment) 77 2e-14
Os05g0579300 ZF-HD homeobox protein Cys/His-rich dimerisati... 75 7e-14
Os04g0434500 ZF-HD homeobox protein Cys/His-rich dimerisati... 75 8e-14
Os01g0635550 ZF-HD homeobox protein Cys/His-rich dimerisati... 73 2e-13
Os08g0438100 Similar to ZF-HD homeobox protein 73 3e-13
Os08g0438400 ZF-HD homeobox protein Cys/His-rich dimerisati... 72 4e-13
Os11g0128300 Similar to ZF-HD homeobox protein (Fragment) 68 8e-12
Os12g0124500 ZF-HD homeobox protein Cys/His-rich dimerisati... 65 7e-11
>Os12g0208900 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 311
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 180/295 (61%)
Query: 17 CPPLQQARGELPLPMHAAASPYLXXXXXXXXXXXXXXXXXXXXXXXMSXXXXXXXXXXXX 76
CPPLQQARGELPLPMHAAASPYL MS
Sbjct: 17 CPPLQQARGELPLPMHAAASPYLGLHHDHHHHHGGGGGGGGMNGRHMSPPTPPAAAEESK 76
Query: 77 XXXXXXXXXXXXXRYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNF 136
RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNF
Sbjct: 77 AVVVVSSSATAAARYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNF 136
Query: 137 HRKELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRMVMPLSAMHTSES 196
HRKELD TRMVMPLSAMHTSES
Sbjct: 137 HRKELDAAAAPPLHHHHHQLLGVGAHPRGHGHHHHHLLVAALPPPTRMVMPLSAMHTSES 196
Query: 197 DDXXXXXXXXXXXXXXXXXXXXXEQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRR 256
DD EQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRR
Sbjct: 197 DDAAARPGGGAAARKRFRTKFTAEQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRR 256
Query: 257 VLKYGSGAPEELKKLDFFWEXXXXXXXNPLRNKMKIHLASASTSIRLQLSPTETL 311
VLKYGSGAPEELKKLDFFWE NPLRNKMKIHLASASTSIRLQLSPTETL
Sbjct: 257 VLKYGSGAPEELKKLDFFWERRGGGGGNPLRNKMKIHLASASTSIRLQLSPTETL 311
>Os11g0243300 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 383
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/53 (88%), Positives = 51/53 (96%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELD 142
+YRECLKNHAAAIGG+ATDGCGEFMP GEEGSL+AL+CSACGCHRNFHRKE D
Sbjct: 144 KYRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKEAD 196
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 183 RMVMPLSAMHTSESDDXXXXXXXXXXXXXXXX---------XXXXXEQKARMLGFAEEVG 233
+++MPL+ +HTSESD+ EQKARML FAE VG
Sbjct: 267 QIIMPLNMIHTSESDEMDVSGGGGGVGRGGGSSSSSKKRFRTKFTAEQKARMLEFAERVG 326
Query: 234 WRLQKLEDAVVQRFCQEVGVKRRVLKYGSG 263
WRLQKL+DA+V FCQE+GVKRRVLK+ G
Sbjct: 327 WRLQKLDDAMVHHFCQEIGVKRRVLKHAVG 356
>Os08g0479400 Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor
Length = 290
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 45/51 (88%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKE 140
RYRECLKNHA IGG A DGCGEFM GEEGS+DALRC+ACGCHRNFHRKE
Sbjct: 62 RYRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKE 112
>Os09g0466400 Similar to ZF-HD homeobox protein
Length = 279
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 44/51 (86%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKE 140
RYRECLKNHA IGG A DGCGEFM GEEG++DALRC+AC CHRNFHRKE
Sbjct: 56 RYRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHRNFHRKE 106
>Os03g0718500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 238
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELDXXXXXXXX 150
YREC++NHAA +G A DGC E+ P ++G L C+ACGCHRNFHRK+
Sbjct: 12 YRECMRNHAAKLGTYANDGCCEYTP--DDGHPAGLLCAACGCHRNFHRKDF--------- 60
Query: 151 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRMVMPLSAMHTSESDDXXXXXXXXXXXX 210
M ++AM +
Sbjct: 61 -LDGRATAAAGGAGGAGVGVAPMLPAPGGGGPPGYMHMAAMGGAVGGGGGVDGGGGSGGR 119
Query: 211 XXXXXXXXXEQKARMLGFAEEVGWRLQKLE------DAVVQRFCQEVGVKRRVLK 259
EQKARML FAE +GWR+ K E D V RFC+E+GV R+V K
Sbjct: 120 RRTRTKFTEEQKARMLRFAERLGWRMPKREPGRAPGDDEVARFCREIGVNRQVFK 174
>Os09g0414600 Similar to ZF-HD homeobox protein (Fragment)
Length = 109
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFMPGGEEGSLD--ALRCSACGCHRNFHRK 139
YRECLKNHAA++GG A DGCGEFMP D +LRC+ACGCHRNFHR+
Sbjct: 41 YRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFHRR 91
>Os05g0579300 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 255
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKE 140
RY ECL+NHAAA+GG DGC EFMP + + DAL+C+ACGCHR+FHRK+
Sbjct: 44 RYHECLRNHAAAMGGHVVDGCREFMPMPGDAA-DALKCAACGCHRSFHRKD 93
>Os04g0434500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 283
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 42/50 (84%), Gaps = 4/50 (8%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRK 139
+Y+EC++NHAAA+GG A DGCGE+MP S D+L+C+ACGCHR+FHR+
Sbjct: 22 KYKECMRNHAAAMGGQAFDGCGEYMP----ASPDSLKCAACGCHRSFHRR 67
>Os01g0635550 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 232
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKE 140
RY ECL+NHAAA GG DGCGEFMP E + L C+ACGCHR+FHR++
Sbjct: 39 RYHECLRNHAAASGGHVVDGCGEFMPASTE---EPLACAACGCHRSFHRRD 86
>Os08g0438100 Similar to ZF-HD homeobox protein
Length = 93
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRK 139
RY EC +NHAA +GG A DGC EF+ GEEG+ ALRC+ACGCHR+FHR+
Sbjct: 3 RYGECRRNHAARMGGHAVDGCREFLAEGEEGTGGALRCAACGCHRSFHRR 52
>Os08g0438400 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 359
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFM--PGGEEGSLDALRCSACGCHRNFHRK 139
YRECLKNHAA++GG A DGCGEFM P + +L+C+ACGCHRNFHR+
Sbjct: 39 YRECLKNHAASLGGHAVDGCGEFMPSPAADAADPASLKCAACGCHRNFHRR 89
>Os11g0128300 Similar to ZF-HD homeobox protein (Fragment)
Length = 105
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELD 142
RYREC +NHAA+IGG A DGC EFM G EG+ AL C+ACGCHR+FHR+E++
Sbjct: 34 RYRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREVE 86
>Os12g0124500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 105
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 43/53 (81%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELD 142
RYREC +NHAA+IGG A DGC EFM G +G+ AL C+ACGCH++FHR+E++
Sbjct: 34 RYRECQRNHAASIGGHAVDGCREFMASGADGTAAALLCAACGCHQSFHRREVE 86
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,647,382
Number of extensions: 203165
Number of successful extensions: 468
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 16
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)