Os08g0438100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ZF-HD homeobox protein.
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Os08g0438100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ZF-HD homeobox protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 725.02 | 1.27 | 3.51 | -2.36 | 0.835 | 2.19 | -1.98 | -10.6 | -0.277 | 5.24 | 33.62 | 966 | -- | -- |
| 729.37 | 1.26 | 3.34 | -0.949 | 0.808 | 1.01 | -1.46 | -- | -0.202 | 4.98 | 33.61 | 967 | -- | -- |
| 734.47 | 1.26 | 3.49 | -2.28 | 0.806 | 2.23 | -- | -10.4 | -0.261 | 5.17 | 34.1 | 967 | -- | -- |
| 738.12 | 1.27 | 3.35 | -1.01 | 0.816 | 1.01 | -- | -- | -0.23 | 5.29 | 33.5 | 967 | -- | -- |
| 769.38 | 1.29 | 3.5 | -2.24 | -- | 2.18 | -- | -10.1 | -0.244 | -- | 33.95 | 978 | -- | -- |
| 767.92 | 1.3 | 3.39 | -0.836 | 0.864 | -- | -1.85 | -- | -0.42 | 4.91 | -- | -- | -- | -- |
| 776.6 | 1.31 | 3.39 | -0.831 | 0.851 | -- | -- | -- | -0.411 | 4.7 | -- | -- | -- | -- |
| 771.47 | 1.29 | 3.35 | -0.988 | -- | 0.977 | -- | -- | -0.237 | -- | 33.3 | 1046 | -- | -- |
| 764.74 | 1.29 | 3.33 | -- | 0.815 | 0.863 | -- | -- | -0.169 | 5.33 | 33.62 | 967 | -- | -- |
| 815.01 | 1.33 | 3.39 | -0.799 | -- | -- | -- | -- | -0.389 | -- | -- | -- | -- | -- |
| 794.82 | 1.32 | 3.36 | -- | 0.836 | -- | -- | -- | -0.318 | 4.73 | -- | -- | -- | -- |
| 797.53 | 1.32 | 3.34 | -- | -- | 0.853 | -- | -- | -0.144 | -- | 33.4 | 1041 | -- | -- |
| 831.85 | 1.35 | 3.37 | -- | -- | -- | -- | -- | -0.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 719.35 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 2 | 720.45 | temperature | 25 | 10 | < th | dose independent | rect. | 4 | 5 |
| 4 | 721.12 | temperature | 25 | 10 | < th | dose independent | rect. | 2 | 7 |
| 5 | 721.94 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 20 | 722.05 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 30 | 722.07 | humidity | 60 | 720 | < th | dose independent | rect. | 18 | 1 |
| 45 | 722.30 | humidity | 60 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 77 | 723.89 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 118 | 725.39 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 119 | 725.60 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 133 | 725.69 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 134 | 726.06 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 4 |
| 136 | 726.46 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 252 | 729.19 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 253 | 729.32 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |
| 270 | 729.45 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 19 |
| 271 | 729.46 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 12 |
| 293 | 729.88 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 295 | 729.91 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 314 | 729.95 | temperature | 15 | 10 | > th | dose independent | rect. | 10 | 16 |
| 317 | 730.00 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 325 | 730.17 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 374 | 730.88 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 375 | 731.06 | humidity | 90 | 10 | > th | dose independent | rect. | 2 | 7 |
| 400 | 731.64 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 7 |
| 402 | 731.78 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 12 |
| 403 | 731.79 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 458 | 732.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 474 | 732.47 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 479 | 732.65 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 498 | 732.83 | temperature | 30 | 720 | > th | dose independent | sin | 12 | NA |
| 540 | 733.15 | humidity | 50 | 4320 | > th | dose independent | sin | 11 | NA |
| 567 | 733.20 | humidity | 90 | 10 | > th | dose independent | rect. | 2 | 16 |
| 590 | 733.29 | humidity | 60 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 593 | 733.32 | humidity | 90 | 10 | > th | dose independent | rect. | 2 | 12 |
| 636 | 733.51 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 651 | 733.58 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 657 | 733.64 | humidity | 50 | 4320 | < th | dose independent | sin | 11 | NA |
| 754 | 734.36 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 770 | 734.57 | humidity | 70 | 720 | < th | dose dependent | sin | 12 | NA |
| 796 | 734.68 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 870 | 734.85 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 982 | 735.33 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 13 |
| 985 | 735.34 | radiation | 30 | 90 | < th | dose independent | rect. | 2 | 8 |