BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0438100 Os08g0438100|AK107904
(93 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74660.1 | chr1:28047742-28048050 REVERSE LENGTH=103 72 4e-14
AT3G28917.1 | chr3:10925014-10925316 FORWARD LENGTH=101 68 8e-13
AT2G02540.1 | chr2:684302-685234 FORWARD LENGTH=311 67 2e-12
AT1G14440.1 | chr1:4939076-4940014 REVERSE LENGTH=313 66 3e-12
AT4G24660.1 | chr4:12724851-12725513 REVERSE LENGTH=221 66 3e-12
AT1G18835.1 | chr1:6496106-6496372 REVERSE LENGTH=89 65 7e-12
AT3G50890.1 | chr3:18916420-18917169 FORWARD LENGTH=250 64 2e-11
AT1G69600.1 | chr1:26182470-26183198 FORWARD LENGTH=243 62 4e-11
AT2G18350.1 | chr2:7971122-7971910 REVERSE LENGTH=263 62 4e-11
AT3G28920.1 | chr3:10940598-10941536 REVERSE LENGTH=313 62 5e-11
AT5G65410.1 | chr5:26136179-26137018 FORWARD LENGTH=280 62 5e-11
AT1G75240.1 | chr1:28241576-28242505 FORWARD LENGTH=310 62 7e-11
AT5G39760.1 | chr5:15911543-15912547 FORWARD LENGTH=335 61 1e-10
AT5G60480.1 | chr5:24323594-24324169 FORWARD LENGTH=192 59 7e-10
AT5G15210.1 | chr5:4937874-4938689 REVERSE LENGTH=272 57 2e-09
AT5G42780.1 | chr5:17154841-17155569 FORWARD LENGTH=243 54 2e-08
AT1G14687.1 | chr1:5048046-5048552 FORWARD LENGTH=169 51 1e-07
>AT1G74660.1 | chr1:28047742-28048050 REVERSE LENGTH=103
Length = 102
Score = 72.4 bits (176), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 39/49 (79%)
Query: 2 VRYGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
VRY EC++NHAA +GG+AVDGCREF+A ALRCAACGCHR+FH
Sbjct: 37 VRYVECQKNHAANIGGYAVDGCREFMAAGVEGTVDALRCAACGCHRNFH 85
>AT3G28917.1 | chr3:10925014-10925316 FORWARD LENGTH=101
Length = 100
Score = 68.2 bits (165), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 2 VRYGECRRNHAARMGGHAVDGCREFLAXX-XXXXXXALRCAACGCHRSFH 50
VRYGEC++NHAA +GG+AVDGCREF+A AL CAACGCHRSFH
Sbjct: 31 VRYGECQKNHAAAVGGYAVDGCREFMASRGEEGTVAALTCAACGCHRSFH 80
>AT2G02540.1 | chr2:684302-685234 FORWARD LENGTH=311
Length = 310
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 2 VRYGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
++Y EC +NHAA MGG+A+DGC EF+ AL C+ C CHR+FH
Sbjct: 85 IKYKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEALTCSVCNCHRNFH 133
>AT1G14440.1 | chr1:4939076-4940014 REVERSE LENGTH=313
Length = 312
Score = 66.2 bits (160), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 2 VRYGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
++Y EC +NHAA MGG+A DGC EF+ AL C+AC CHR+FH
Sbjct: 88 IKYKECLKNHAAAMGGNATDGCGEFMPSGEDGSIEALTCSACNCHRNFH 136
>AT4G24660.1 | chr4:12724851-12725513 REVERSE LENGTH=221
Length = 220
Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%)
Query: 1 RVRYGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
++RY EC +NHA +GGHAVDGC EF+ AL+CAACGCHR+FH
Sbjct: 46 KIRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFH 95
>AT1G18835.1 | chr1:6496106-6496372 REVERSE LENGTH=89
Length = 88
Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 38/49 (77%), Gaps = 3/49 (6%)
Query: 2 VRYGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
VRY EC++NHAA +GG+AVDGCREF+A AL CAACGCHR+FH
Sbjct: 24 VRYVECQKNHAANIGGYAVDGCREFMA---SGGDDALTCAACGCHRNFH 69
>AT3G50890.1 | chr3:18916420-18917169 FORWARD LENGTH=250
Length = 249
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 34/48 (70%)
Query: 3 RYGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
+Y EC++NHAA GGH VDGC EF+A AL+CAAC CHRSFH
Sbjct: 59 KYRECQKNHAASTGGHVVDGCCEFMAGGEEGTLGALKCAACNCHRSFH 106
>AT1G69600.1 | chr1:26182470-26183198 FORWARD LENGTH=243
Length = 242
Score = 62.4 bits (150), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 4 YGECRRNHAARMGGHAVDGCREFLAXXXXXXX--XALRCAACGCHRSFH 50
Y EC +NHAA +GGHA+DGC EF+ +LRCAACGCHR+FH
Sbjct: 31 YKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFH 79
>AT2G18350.1 | chr2:7971122-7971910 REVERSE LENGTH=263
Length = 262
Score = 62.4 bits (150), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 1 RVRYGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
+ RY EC++NHAA GGH VDGC EF++ +L CAAC CHRSFH
Sbjct: 79 KARYRECQKNHAASSGGHVVDGCGEFMSSGEEGTVESLLCAACDCHRSFH 128
>AT3G28920.1 | chr3:10940598-10941536 REVERSE LENGTH=313
Length = 312
Score = 62.4 bits (150), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 1 RVRYGECRRNHAARMGGHAVDGCREFL--AXXXXXXXXALRCAACGCHRSFH 50
+V Y EC +NHAA +GGHA+DGC EF+ +L+CAACGCHR+FH
Sbjct: 49 KVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTPSDPTSLKCAACGCHRNFH 100
>AT5G65410.1 | chr5:26136179-26137018 FORWARD LENGTH=280
Length = 279
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 1 RVRYGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
R R+ EC +N A +GGHAVDGC EF+ AL+CAACGCHR+FH
Sbjct: 72 RFRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFH 121
>AT1G75240.1 | chr1:28241576-28242505 FORWARD LENGTH=310
Length = 309
Score = 61.6 bits (148), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 32/49 (65%)
Query: 2 VRYGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
VRY EC +NHAA +GG DGC EF+ ALRCAAC CHR+FH
Sbjct: 74 VRYRECLKNHAASVGGSVHDGCGEFMPSGEEGTIEALRCAACDCHRNFH 122
>AT5G39760.1 | chr5:15911543-15912547 FORWARD LENGTH=335
Length = 334
Score = 60.8 bits (146), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 4 YGECRRNHAARMGGHAVDGCREFL--AXXXXXXXXALRCAACGCHRSFH 50
Y EC +NHAA +GGHA+DGC EF+ +L+CAACGCHR+FH
Sbjct: 56 YKECLKNHAAALGGHALDGCGEFMPSPSSISSDPTSLKCAACGCHRNFH 104
>AT5G60480.1 | chr5:24323594-24324169 FORWARD LENGTH=192
Length = 191
Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 2 VRYGECRRNHAARMGGHAVDGCREFLAXXXXXXX--XALRCAACGCHRSFH 50
V Y EC +NHA +GGHA+DGC EF +LRC ACGCHR+FH
Sbjct: 3 VLYNECLKNHAVSLGGHALDGCGEFTPKSTTILTDPPSLRCDACGCHRNFH 53
>AT5G15210.1 | chr5:4937874-4938689 REVERSE LENGTH=272
Length = 271
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 4 YGECRRNHAARMGGHAVDGCREFLAXXX--XXXXXALRCAACGCHRSFH 50
Y EC +NHAA +GGHA+DGC EF+ +L CAACGCHR+FH
Sbjct: 56 YKECLKNHAAGIGGHALDGCGEFMPSPSFNSNDPASLTCAACGCHRNFH 104
>AT5G42780.1 | chr5:17154841-17155569 FORWARD LENGTH=243
Length = 242
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 4 YGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
Y ECR+NHAA +G A DGC EF++ +L CAACGCHR+FH
Sbjct: 64 YYECRKNHAADIGTTAYDGCGEFVS--STGEEDSLNCAACGCHRNFH 108
>AT1G14687.1 | chr1:5048046-5048552 FORWARD LENGTH=169
Length = 168
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 4 YGECRRNHAARMGGHAVDGCREFLAXXXXXXXXALRCAACGCHRSFH 50
Y EC RNHAA++G +A+DGCRE+ C ACGCHRS+H
Sbjct: 7 YRECMRNHAAKLGSYAIDGCREYSQPSTGDL-----CVACGCHRSYH 48
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.140 0.542
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,285,929
Number of extensions: 25474
Number of successful extensions: 52
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 17
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)