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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0718500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ZF-HD homeobox protein Cys/His-rich dimerisation region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0321) R2 : 0.000689
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0379 (0.0676) R2dN8 : 0.00089 R2N8 : 0.000689
σ : 0.604
deviance : 167.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.68 0.579 3.3 -0.351 0.252 -0.46 -0.79 0.466 -0.0264 4.3 19.64 77 -- --
152.42 0.575 3.3 -0.376 0.268 -0.461 -0.554 -- -0.0245 4.45 19.24 77 -- --
153.12 0.576 3.31 -0.359 0.248 -0.484 -- 0.289 -0.0344 3.97 19.59 81 -- --
153.21 0.576 3.3 -0.373 0.261 -0.481 -- -- -0.0356 4.06 19.6 81 -- --
155.71 0.581 3.3 -0.345 -- -0.355 -- 0.23 -0.0106 -- 19.25 63 -- --
159.4 0.592 3.29 -0.336 0.28 -- -0.327 -- -0.00176 9.24 -- -- -- --
159.72 0.592 3.29 -0.346 0.28 -- -- -- -0.00118 9.7 -- -- -- --
155.91 0.582 3.3 -0.354 -- -0.356 -- -- -0.0102 -- 19.24 66 -- --
156.75 0.583 3.29 -- 0.237 -0.455 -- -- 0.0151 4.27 19.64 80 -- --
164.37 0.599 3.3 -0.349 -- -- -- -- -0.000788 -- -- -- -- --
162.87 0.597 3.28 -- 0.281 -- -- -- 0.0374 9.8 -- -- -- --
159.21 0.588 3.29 -- -- -0.36 -- -- 0.034 -- 19.64 73 -- --
167.58 0.604 3.29 -- -- -- -- -- 0.0379 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.75 temperature 20.0 30 > th dose dependent rect. 2 1
3 136.93 temperature 20.0 30 > th dose independent rect. 2 1
4 136.95 wind 3.0 30 < th dose dependent rect. 2 1
6 137.05 humidity 90.0 30 > th dose independent rect. 2 1
7 137.05 humidity 80.0 30 > th dose dependent rect. 2 1
10 137.12 wind 3.0 30 < th dose independent rect. 2 1
14 137.14 atmosphere 1005.0 30 > th dose independent rect. 2 1
15 137.15 atmosphere 1000.0 30 > th dose dependent rect. 2 1
25 137.27 temperature 10.0 30 > th dose independent rect. 2 1
27 137.27 temperature 30.0 30 < th dose independent rect. 2 1
28 137.27 humidity 50.0 30 > th dose independent rect. 2 1
31 137.27 atmosphere 995.0 30 > th dose independent rect. 2 1
32 137.27 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 137.27 radiation 1.0 30 < th dose independent rect. 2 1
39 137.27 precipitation 0.1 30 < th dose independent rect. 2 1
40 137.27 temperature 10.0 30 > th dose independent rect. 3 23
41 137.27 radiation 1.0 30 < th dose dependent rect. 2 1
46 137.27 precipitation 0.1 30 < th dose dependent rect. 2 1
49 137.68 atmosphere 1015.0 30 < th dose dependent rect. 2 1
54 138.08 wind 9.0 30 < th dose independent rect. 3 23
55 138.09 temperature 30.0 30 < th dose dependent rect. 2 1
66 138.59 wind 1.0 30 > th dose independent rect. 2 1
108 142.34 radiation 40.0 10 < th dose dependent rect. 3 23
109 142.65 radiation 30.0 10 < th dose independent rect. 3 8
119 144.84 radiation 40.0 90 < th dose dependent rect. 3 8
120 144.93 radiation 40.0 10 < th dose dependent rect. 3 8
129 145.62 atmosphere 1000.0 30 > th dose independent rect. 3 8
134 145.85 humidity 50.0 90 > th dose dependent rect. 3 8
135 145.88 radiation 20.0 90 < th dose independent rect. 3 6
136 145.88 radiation 20.0 30 < th dose independent rect. 3 23
139 145.96 precipitation 0.1 30 < th dose independent rect. 3 23
140 145.96 precipitation 0.1 30 < th dose dependent rect. 3 23
144 146.13 radiation 40.0 10 < th dose independent rect. 3 23
152 146.32 temperature 10.0 720 > th dose dependent rect. 3 2
153 146.34 humidity 70.0 90 > th dose independent rect. 3 6
154 146.38 radiation 30.0 10 < th dose independent rect. 3 11
156 146.52 radiation 20.0 90 < th dose independent rect. 3 10
160 146.58 radiation 30.0 90 < th dose dependent rect. 3 6
163 146.63 atmosphere 1000.0 10 > th dose independent rect. 3 23
168 146.65 radiation 30.0 90 < th dose dependent rect. 3 10
169 146.68 humidity 60.0 90 > th dose independent rect. 3 8
173 146.71 temperature 10.0 30 > th dose dependent rect. 3 23
175 146.72 humidity 60.0 90 > th dose dependent rect. 3 6
178 146.74 temperature 10.0 90 > th dose dependent rect. 3 20
190 146.89 wind 3.0 30 < th dose dependent rect. 23 4
213 147.23 radiation 40.0 90 < th dose dependent rect. 3 12
215 147.28 radiation 20.0 90 < th dose independent rect. 3 12
260 147.70 radiation 20.0 90 < th dose independent rect. 3 20
273 147.79 atmosphere 1010.0 90 < th dose independent rect. 3 20
280 147.85 atmosphere 995.0 30 > th dose dependent rect. 3 8
288 147.93 atmosphere 1015.0 30 < th dose independent rect. 3 23
300 148.03 atmosphere 1000.0 90 > th dose independent rect. 3 20
312 148.14 atmosphere 1000.0 90 > th dose independent rect. 3 6
321 148.22 atmosphere 1010.0 90 < th dose independent rect. 3 8
324 148.23 radiation 20.0 10 > th dose dependent sin 9 NA
330 148.28 radiation 40.0 10 < th dose independent sin 9 NA
344 148.34 humidity 50.0 10 > th dose independent rect. 3 23
348 148.36 wind 9.0 30 < th dose dependent rect. 3 8
357 148.40 temperature 25.0 270 > th dose independent rect. 3 6
358 148.40 temperature 30.0 30 < th dose independent rect. 3 8
371 148.49 radiation 40.0 10 < th dose independent rect. 3 20
378 148.52 temperature 20.0 720 > th dose dependent rect. 3 5
385 148.55 wind 7.0 30 < th dose independent rect. 3 8
407 148.66 precipitation 0.1 30 < th dose independent rect. 11 16
408 148.66 precipitation 0.1 30 < th dose dependent rect. 11 16
415 148.69 temperature 10.0 30 > th dose independent rect. 3 8
420 148.69 temperature 10.0 30 > th dose independent rect. 11 16
432 148.73 temperature 30.0 720 < th dose dependent rect. 22 12
439 148.77 temperature 20.0 720 > th dose independent rect. 3 2
445 148.78 radiation 10.0 10 > th dose dependent rect. 15 21
447 148.85 humidity 50.0 90 > th dose dependent rect. 3 11
450 148.88 precipitation 0.1 30 < th dose independent rect. 3 8
452 148.88 precipitation 0.1 30 < th dose dependent rect. 3 8
458 148.91 wind 3.0 90 < th dose independent rect. 21 6
473 148.98 temperature 20.0 720 > th dose dependent sin 7 NA
499 149.09 wind 9.0 90 < th dose dependent rect. 3 12
508 149.12 wind 9.0 30 < th dose independent rect. 11 16
516 149.15 wind 7.0 90 < th dose independent rect. 3 11
536 149.20 temperature 25.0 10 > th dose dependent sin 8 NA
542 149.22 wind 7.0 90 < th dose independent rect. 3 20
557 149.26 temperature 20.0 720 > th dose dependent rect. 21 15
580 149.31 temperature 10.0 30 > th dose dependent rect. 3 8
592 149.33 temperature 15.0 90 > th dose independent rect. 3 20
607 149.36 temperature 25.0 270 > th dose independent rect. 23 3
612 149.37 humidity 60.0 90 > th dose dependent rect. 23 4
633 149.42 atmosphere 995.0 90 > th dose dependent rect. 23 4
638 149.43 atmosphere 995.0 30 > th dose independent rect. 11 16
667 149.48 wind 1.0 10 < th dose independent rect. 7 20
686 149.51 radiation 20.0 10 < th dose independent rect. 18 15
704 149.55 wind 9.0 30 < th dose dependent rect. 3 23
717 149.60 radiation 10.0 10 > th dose dependent rect. 7 5
749 149.63 wind 9.0 90 < th dose dependent rect. 3 16
773 149.69 atmosphere 1015.0 30 < th dose independent rect. 11 16
810 149.76 humidity 50.0 30 > th dose independent rect. 11 16
826 149.81 radiation 30.0 10 < th dose independent rect. 17 18
827 149.81 temperature 30.0 720 < th dose dependent sin 8 NA
837 149.83 radiation 20.0 90 < th dose independent rect. 17 16
856 149.89 humidity 80.0 90 > th dose independent rect. 23 4
863 149.90 atmosphere 1000.0 90 > th dose independent rect. 3 11
886 149.94 temperature 10.0 1440 > th dose independent rect. 4 8
889 149.94 atmosphere 995.0 1440 > th dose independent rect. 4 8
890 149.94 temperature 10.0 1440 > th dose independent rect. 12 16
902 149.96 humidity 60.0 90 > th dose independent rect. 3 11
907 149.96 wind 9.0 90 < th dose dependent rect. 15 12
911 149.97 temperature 25.0 270 < th dose independent rect. 7 2
921 149.98 temperature 25.0 270 < th dose independent rect. 6 5
943 150.04 humidity 70.0 1440 > th dose independent rect. 4 3
944 150.04 wind 7.0 90 < th dose independent rect. 3 18
945 150.04 temperature 10.0 720 > th dose dependent sin 7 NA
950 150.04 temperature 10.0 720 > th dose dependent rect. 21 17
952 150.05 wind 9.0 1440 < th dose independent rect. 3 1
953 150.05 temperature 10.0 1440 > th dose independent rect. 3 1
956 150.05 temperature 30.0 1440 < th dose independent rect. 3 1
960 150.05 humidity 50.0 1440 > th dose independent rect. 3 1
969 150.05 atmosphere 995.0 1440 > th dose independent rect. 3 1
970 150.05 radiation 1.0 1440 < th dose independent rect. 3 1
991 150.05 precipitation 0.1 90 < th dose independent rect. 9 18
993 150.05 temperature 10.0 1440 > th dose independent rect. 4 23
997 150.05 radiation 1.0 1440 < th dose dependent rect. 3 1