Os12g0208900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ZF-HD homeobox protein Cys/His-rich dimerisation region domain containing protein.
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Os12g0208900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ZF-HD homeobox protein Cys/His-rich dimerisation region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 313.66 | 0.832 | 3.39 | 1.22 | 0.609 | 0.675 | 0.673 | -3.04 | 0.0064 | 2.75 | 24.8 | 1337 | -- | -- |
| 322.6 | 0.837 | 3.5 | 0.393 | 0.473 | 0.527 | 1.28 | -- | -0.315 | 3.11 | 27 | 4631 | -- | -- |
| 314.32 | 0.826 | 3.39 | 1.23 | 0.629 | 0.643 | -- | -3.1 | 0.017 | 2.39 | 24.7 | 1229 | -- | -- |
| 325.1 | 0.84 | 3.5 | 0.423 | 0.528 | 0.597 | -- | -- | -0.358 | 2.38 | 27 | 4631 | -- | -- |
| 333.73 | 0.855 | 3.49 | 0.176 | -- | 0.405 | -- | 0.277 | -0.264 | -- | 24.7 | 1320 | -- | -- |
| 331 | 0.853 | 3.53 | 0.142 | 0.521 | -- | 0.976 | -- | -0.45 | 2.88 | -- | -- | -- | -- |
| 334.08 | 0.856 | 3.53 | 0.12 | 0.522 | -- | -- | -- | -0.455 | 2.48 | -- | -- | -- | -- |
| 334.14 | 0.855 | 3.48 | 0.254 | -- | 0.415 | -- | -- | -0.238 | -- | 24.7 | 1320 | -- | -- |
| 326.07 | 0.841 | 3.53 | -- | 0.575 | 0.51 | -- | -- | -0.464 | 2.19 | 28.8 | 3773 | -- | -- |
| 350.11 | 0.874 | 3.53 | 0.142 | -- | -- | -- | -- | -0.442 | -- | -- | -- | -- | -- |
| 334.46 | 0.855 | 3.53 | -- | 0.524 | -- | -- | -- | -0.469 | 2.48 | -- | -- | -- | -- |
| 335.8 | 0.856 | 3.49 | -- | -- | 0.396 | -- | -- | -0.275 | -- | 24.7 | 1320 | -- | -- |
| 350.65 | 0.874 | 3.53 | -- | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 308.45 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 3 | 309.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 4 | 309.67 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 16 | 5 |
| 6 | 309.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 14 | 310.42 | temperature | 30 | 270 | < th | dose dependent | sin | 13 | NA |
| 16 | 310.44 | temperature | 20 | 30 | < th | dose dependent | rect. | 19 | 14 |
| 20 | 310.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 14 |
| 21 | 310.57 | temperature | 15 | 30 | > th | dose independent | rect. | 21 | 23 |
| 22 | 310.57 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 24 | 310.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 28 | 310.62 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 33 | 310.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 67 | 310.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 116 | 311.32 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 193 | 311.64 | radiation | 10 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 197 | 311.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 214 | 311.72 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 275 | 311.94 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 16 | 5 |
| 281 | 311.98 | wind | 1 | 270 | > th | dose dependent | rect. | 20 | 4 |
| 299 | 312.06 | temperature | 15 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 321 | 312.13 | temperature | 20 | 10 | < th | dose dependent | rect. | 19 | 5 |
| 326 | 312.16 | wind | 3 | 270 | > th | dose independent | rect. | 20 | 4 |
| 418 | 312.46 | wind | 3 | 270 | > th | dose independent | rect. | 21 | 2 |
| 533 | 312.76 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 11 |
| 559 | 312.84 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 18 | 8 |
| 643 | 313.06 | humidity | 80 | 90 | > th | dose independent | rect. | 17 | 4 |
| 817 | 313.45 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 825 | 313.46 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 14 |
| 842 | 313.48 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 15 | NA |
| 848 | 313.50 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 6 |
| 857 | 313.52 | wind | 1 | 90 | > th | dose dependent | rect. | 23 | 2 |
| 884 | 313.58 | humidity | 80 | 90 | > th | dose independent | rect. | 13 | 8 |
| 892 | 313.59 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 3 |
| 973 | 313.78 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 15 |
| 976 | 313.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 984 | 313.81 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 12 |
| 987 | 313.82 | wind | 1 | 10 | > th | dose independent | rect. | 20 | 6 |