BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0208900 Os12g0208900|Os12g0208900
(311 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14440.1 | chr1:4939076-4940014 REVERSE LENGTH=313 143 1e-34
AT1G75240.1 | chr1:28241576-28242505 FORWARD LENGTH=310 104 8e-23
AT1G69600.1 | chr1:26182470-26183198 FORWARD LENGTH=243 102 3e-22
AT2G02540.1 | chr2:684302-685234 FORWARD LENGTH=311 97 8e-21
AT4G24660.1 | chr4:12724851-12725513 REVERSE LENGTH=221 97 1e-20
AT5G65410.1 | chr5:26136179-26137018 FORWARD LENGTH=280 95 4e-20
AT1G74660.1 | chr1:28047742-28048050 REVERSE LENGTH=103 92 4e-19
AT2G18350.1 | chr2:7971122-7971910 REVERSE LENGTH=263 88 5e-18
AT3G50890.1 | chr3:18916420-18917169 FORWARD LENGTH=250 87 8e-18
AT5G15210.1 | chr5:4937874-4938689 REVERSE LENGTH=272 82 5e-16
AT3G28917.1 | chr3:10925014-10925316 FORWARD LENGTH=101 80 1e-15
AT1G18835.1 | chr1:6496106-6496372 REVERSE LENGTH=89 79 3e-15
AT3G28920.1 | chr3:10940598-10941536 REVERSE LENGTH=313 77 1e-14
AT5G39760.1 | chr5:15911543-15912547 FORWARD LENGTH=335 74 1e-13
AT5G60480.1 | chr5:24323594-24324169 FORWARD LENGTH=192 74 1e-13
AT5G42780.1 | chr5:17154841-17155569 FORWARD LENGTH=243 73 2e-13
AT1G14687.1 | chr1:5048046-5048552 FORWARD LENGTH=169 55 4e-08
>AT1G14440.1 | chr1:4939076-4940014 REVERSE LENGTH=313
Length = 312
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 99/186 (53%), Gaps = 23/186 (12%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELDXXXXXXX 149
+Y+ECLKNHAAA+GG+ATDGCGEFMP GE+GS++AL CSAC CHRNFHRKE++
Sbjct: 89 KYKECLKNHAAAMGGNATDGCGEFMPSGEDGSIEALTCSACNCHRNFHRKEVEGELAATA 148
Query: 150 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRMVMPLSA-----MH-TSESDDXXXXX 203
+M+MP+ MH SES+D
Sbjct: 149 MSPYHQHPPHRKLMLNHQKIRSAMPH-------QMIMPIGVSNYRYMHNNSESEDFMEED 201
Query: 204 XXXX----------XXXXXXXXXXXXEQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGV 253
EQK +ML FAE+VGW++Q+ ED VVQRFC+E+GV
Sbjct: 202 GVTTASRSLPNLPYNQKKRFRTKFTPEQKEKMLSFAEKVGWKIQRQEDCVVQRFCEEIGV 261
Query: 254 KRRVLK 259
KRRVLK
Sbjct: 262 KRRVLK 267
>AT1G75240.1 | chr1:28241576-28242505 FORWARD LENGTH=310
Length = 309
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 49/53 (92%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELD 142
RYRECLKNHAA++GGS DGCGEFMP GEEG+++ALRC+AC CHRNFHRKE+D
Sbjct: 75 RYRECLKNHAASVGGSVHDGCGEFMPSGEEGTIEALRCAACDCHRNFHRKEMD 127
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 220 EQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLK 259
+QK RM+ FAE++GWR+ K ++ ++RFC E+GVKR+V K
Sbjct: 250 DQKERMMDFAEKLGWRMNKQDEEELKRFCGEIGVKRQVFK 289
>AT1G69600.1 | chr1:26182470-26183198 FORWARD LENGTH=243
Length = 242
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 77/175 (44%), Gaps = 6/175 (3%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFMPGGEEGSLD--ALRCSACGCHRNFHRKELDXXXXXX 148
Y+ECLKNHAA +GG A DGCGEFMP S D +LRC+ACGCHRNFHR++
Sbjct: 31 YKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENLNFL 90
Query: 149 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRMVMPLSAMHTSESDDXXXXXXXXXX 208
+++ LS+ SD
Sbjct: 91 TAPPISSPSGTESPPSRHVSSPVPCSYYTSAPPHHVILSLSSGFPGPSDQDPTVVRSENS 150
Query: 209 X----XXXXXXXXXXEQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLK 259
EQK +M FAE+ GW++ ++ V+ FC EVG++R VLK
Sbjct: 151 SRGAMRKRTRTKFTPEQKIKMRAFAEKAGWKINGCDEKSVREFCNEVGIERGVLK 205
>AT2G02540.1 | chr2:684302-685234 FORWARD LENGTH=311
Length = 310
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 46/53 (86%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELD 142
+Y+ECLKNHAA +GG+A DGCGEFMP GEEGS++AL CS C CHRNFHR+E +
Sbjct: 86 KYKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEALTCSVCNCHRNFHRRETE 138
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 35/40 (87%)
Query: 220 EQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLK 259
EQK +M+ FAE VGW++Q+ E++VVQ+ CQE+G++RRVLK
Sbjct: 232 EQKEKMISFAERVGWKIQRQEESVVQQLCQEIGIRRRVLK 271
>AT4G24660.1 | chr4:12724851-12725513 REVERSE LENGTH=221
Length = 220
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 46/53 (86%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELD 142
RYRECLKNHA IGG A DGC EFMP GE+G+LDAL+C+ACGCHRNFHRKE +
Sbjct: 48 RYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETE 100
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 220 EQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLK 259
EQK +ML FAE +GWR+QK +D V++FC E GV+R+VLK
Sbjct: 167 EQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 206
>AT5G65410.1 | chr5:26136179-26137018 FORWARD LENGTH=280
Length = 279
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 45/52 (86%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKEL 141
R+RECLKN A IGG A DGCGEFMP G EG++DAL+C+ACGCHRNFHRKEL
Sbjct: 74 RFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL 125
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 220 EQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLK 259
EQK RML AE +GWR+Q+ +D V+QRFCQE GV R+VLK
Sbjct: 201 EQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLK 240
>AT1G74660.1 | chr1:28047742-28048050 REVERSE LENGTH=103
Length = 102
Score = 91.7 bits (226), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELD 142
RY EC KNHAA IGG A DGC EFM G EG++DALRC+ACGCHRNFHRKE+D
Sbjct: 38 RYVECQKNHAANIGGYAVDGCREFMAAGVEGTVDALRCAACGCHRNFHRKEVD 90
>AT2G18350.1 | chr2:7971122-7971910 REVERSE LENGTH=263
Length = 262
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 44/53 (83%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELD 142
RYREC KNHAA+ GG DGCGEFM GEEG++++L C+AC CHR+FHRKE+D
Sbjct: 81 RYRECQKNHAASSGGHVVDGCGEFMSSGEEGTVESLLCAACDCHRSFHRKEID 133
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 220 EQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLK 259
EQK +M+ FAE++GWR+ KLED V RFC+E+ VKR+V K
Sbjct: 208 EQKEKMMEFAEKIGWRMTKLEDDEVNRFCREIKVKRQVFK 247
>AT3G50890.1 | chr3:18916420-18917169 FORWARD LENGTH=250
Length = 249
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKEL 141
+YREC KNHAA+ GG DGC EFM GGEEG+L AL+C+AC CHR+FHRKE+
Sbjct: 59 KYRECQKNHAASTGGHVVDGCCEFMAGGEEGTLGALKCAACNCHRSFHRKEV 110
>AT5G15210.1 | chr5:4937874-4938689 REVERSE LENGTH=272
Length = 271
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFMPGGEEGSLD--ALRCSACGCHRNFHRKELD 142
Y+ECLKNHAA IGG A DGCGEFMP S D +L C+ACGCHRNFHR+E D
Sbjct: 56 YKECLKNHAAGIGGHALDGCGEFMPSPSFNSNDPASLTCAACGCHRNFHRREED 109
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 221 QKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLK 259
QK +M F+E VGWR+ K +D VV+ FC+E+GV + V K
Sbjct: 190 QKEKMFEFSERVGWRMPKADDVVVKEFCREIGVDKSVFK 228
>AT3G28917.1 | chr3:10925014-10925316 FORWARD LENGTH=101
Length = 100
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPG-GEEGSLDALRCSACGCHRNFHRKELD 142
RY EC KNHAAA+GG A DGC EFM GEEG++ AL C+ACGCHR+FHR+E++
Sbjct: 32 RYGECQKNHAAAVGGYAVDGCREFMASRGEEGTVAALTCAACGCHRSFHRREIE 85
>AT1G18835.1 | chr1:6496106-6496372 REVERSE LENGTH=89
Length = 88
Score = 79.0 bits (193), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/53 (67%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 90 RYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKELD 142
RY EC KNHAA IGG A DGC EFM G + DAL C+ACGCHRNFHR+E+D
Sbjct: 25 RYVECQKNHAANIGGYAVDGCREFMASGGD---DALTCAACGCHRNFHRREVD 74
>AT3G28920.1 | chr3:10940598-10941536 REVERSE LENGTH=313
Length = 312
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFM--PGGEEGSLDALRCSACGCHRNFHRKELD 142
Y+ECLKNHAAAIGG A DGCGEFM P +L+C+ACGCHRNFHR+E D
Sbjct: 52 YKECLKNHAAAIGGHALDGCGEFMPSPSSTPSDPTSLKCAACGCHRNFHRRETD 105
>AT5G39760.1 | chr5:15911543-15912547 FORWARD LENGTH=335
Length = 334
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFM--PGGEEGSLDALRCSACGCHRNFHRKELD 142
Y+ECLKNHAAA+GG A DGCGEFM P +L+C+ACGCHRNFHR++ D
Sbjct: 56 YKECLKNHAAALGGHALDGCGEFMPSPSSISSDPTSLKCAACGCHRNFHRRDPD 109
>AT5G60480.1 | chr5:24323594-24324169 FORWARD LENGTH=192
Length = 191
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFMPGGEEGSLD--ALRCSACGCHRNFHRK 139
Y ECLKNHA ++GG A DGCGEF P D +LRC ACGCHRNFHR+
Sbjct: 5 YNECLKNHAVSLGGHALDGCGEFTPKSTTILTDPPSLRCDACGCHRNFHRR 55
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 220 EQKARMLGFAEEVGWRLQKLEDAVVQRFCQEVGVKRRVLK 259
EQK +M GFAE GW++ ++ V+ FC EVG++R+VLK
Sbjct: 125 EQKVKMRGFAERAGWKINGWDEKWVREFCSEVGIERKVLK 164
>AT5G42780.1 | chr5:17154841-17155569 FORWARD LENGTH=243
Length = 242
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRKEL 141
Y EC KNHAA IG +A DGCGEF+ G D+L C+ACGCHRNFHR+EL
Sbjct: 64 YYECRKNHAADIGTTAYDGCGEFVSST--GEEDSLNCAACGCHRNFHREEL 112
>AT1G14687.1 | chr1:5048046-5048552 FORWARD LENGTH=169
Length = 168
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 91 YRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHRK 139
YREC++NHAA +G A DGC E+ G L C ACGCHR++HR+
Sbjct: 7 YRECMRNHAAKLGSYAIDGCREY-SQPSTGDL----CVACGCHRSYHRR 50
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,851,126
Number of extensions: 110919
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 25
Length of query: 311
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 213
Effective length of database: 8,419,801
Effective search space: 1793417613
Effective search space used: 1793417613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)