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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0128300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ZF-HD homeobox protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.94 (0.0416) R2 : 0.293
β1 : -0.272 (0.174) R2dD : 0.00523 R2D : -0.0197
β2 : 0.794 (0.101) R2dC : 0.0978 R2C : 0.0976
β3 : 1.32 (0.18) R2dE : 0.134 R2E : 0.0829
β4 : 3.42 (0.42) R2dD*C : 0.0959 R2D*C : 0.0867
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.173 (0.0978) R2dN8 : 0.00937 R2N8 : -0.016
σ : 0.752
deviance : 260.36
__
_____
C
peak time of C : 20.6
E
wheather : temperature
threshold : 13.43
memory length : 6953
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.94 0.747 5.05 -1.02 0.783 1.15 3.25 -3.23 -0.327 20.7 20.31 4760 -- --
260.36 0.752 4.94 -0.272 0.794 1.32 3.42 -- -0.173 20.6 13.43 6953 -- --
286.79 0.789 5.05 -1.16 0.786 1.17 -- -3.38 -0.331 21.3 20.49 4599 -- --
294.19 0.799 4.94 -0.385 0.788 1.38 -- -- -0.163 21.3 12.48 6079 -- --
321.17 0.835 5.01 -1.01 -- 1.31 -- -2.75 -0.33 -- 19.67 3701 -- --
291.91 0.801 4.87 0.402 0.822 -- 3.25 -- 0.157 20.8 -- -- -- --
326.74 0.846 4.87 0.289 0.809 -- -- -- 0.153 21.3 -- -- -- --
294.1 0.799 4.91 -0.178 -- 1.77 -- -- -0.152 -- 18.6 659 -- --
283.19 0.784 4.94 -- 0.52 1.71 -- -- -0.14 0.339 18.59 518 -- --
364.99 0.893 4.85 0.293 -- -- -- -- 0.15 -- -- -- -- --
328.94 0.848 4.87 -- 0.81 -- -- -- 0.121 21.4 -- -- -- --
294.86 0.8 4.91 -- -- 1.71 -- -- -0.133 -- 18.7 656 -- --
367.25 0.894 4.85 -- -- -- -- -- 0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.16 temperature 20 4320 > th dose independent rect. 20 1
3 243.09 temperature 20 4320 < th dose independent rect. 20 2
8 246.33 humidity 90 14400 > th dose dependent rect. 21 2
15 247.73 wind 3 43200 < th dose independent rect. 20 2
16 247.86 radiation 1 14400 > th dose independent rect. 18 12
18 248.06 wind 3 43200 > th dose independent rect. 19 3
19 248.07 temperature 10 720 > th dose dependent rect. 20 15
21 248.19 temperature 20 1440 > th dose dependent rect. 6 2
24 248.26 humidity 90 14400 > th dose independent rect. 10 1
28 248.53 temperature 10 270 > th dose dependent rect. 12 22
31 248.56 temperature 20 1440 > th dose dependent rect. 18 15
38 248.85 temperature 20 1440 > th dose dependent rect. 19 2
39 248.88 humidity 90 14400 > th dose dependent rect. 18 6
43 248.98 temperature 20 1440 > th dose dependent rect. 18 4
44 248.98 temperature 20 1440 > th dose dependent rect. 18 7
45 248.99 temperature 10 1440 > th dose dependent rect. 6 1
54 249.11 temperature 15 1440 > th dose dependent rect. 3 5
56 249.14 radiation 1 14400 > th dose independent rect. 4 2
68 249.20 temperature 30 1440 < th dose dependent rect. 3 5
73 249.26 temperature 20 1440 > th dose independent rect. 20 7
76 249.27 temperature 30 1440 < th dose dependent rect. 5 3
78 249.29 temperature 30 1440 < th dose dependent rect. 6 1
86 249.34 temperature 20 1440 < th dose independent rect. 20 7
90 249.37 temperature 30 1440 < th dose dependent rect. 3 1
98 249.41 temperature 15 1440 > th dose dependent rect. 3 1
110 249.48 temperature 20 1440 > th dose independent rect. 23 3
114 249.51 temperature 30 4320 < th dose independent rect. 14 2
168 249.72 temperature 20 1440 < th dose independent rect. 23 3
169 249.73 radiation 1 14400 < th dose independent rect. 23 7
172 249.76 radiation 1 14400 < th dose independent rect. 3 3
173 249.76 radiation 1 14400 < th dose independent rect. 19 11
174 249.76 temperature 30 1440 < th dose dependent rect. 20 13
180 249.78 radiation 1 14400 < th dose independent rect. 1 5
185 249.80 radiation 1 14400 < th dose independent rect. 21 9
207 249.90 humidity 90 14400 < th dose independent rect. 10 1
221 249.95 wind 3 43200 < th dose dependent rect. 8 1
236 250.02 humidity 90 14400 < th dose independent rect. 18 1
243 250.05 temperature 20 1440 > th dose independent rect. 1 1
245 250.06 temperature 20 1440 < th dose independent rect. 1 1
269 250.15 temperature 30 4320 > th dose independent rect. 14 2
272 250.16 temperature 20 1440 > th dose dependent sin 11 NA
277 250.20 wind 1 43200 > th dose independent rect. 8 1
302 250.33 temperature 30 720 < th dose dependent rect. 19 17
372 250.57 temperature 25 1440 < th dose dependent rect. 22 3
387 250.62 temperature 25 1440 < th dose dependent rect. 22 1
398 250.66 temperature 30 1440 < th dose dependent rect. 20 8
404 250.68 temperature 25 1440 < th dose dependent rect. 22 6
429 250.76 radiation 10 43200 < th dose dependent rect. 9 1
445 250.78 wind 5 14400 < th dose independent rect. 20 20
451 250.79 temperature 20 1440 > th dose independent rect. 20 12
488 250.87 atmosphere 995 43200 > th dose independent rect. 21 15
493 250.88 atmosphere 995 43200 > th dose independent rect. 22 13
501 250.90 atmosphere 995 43200 < th dose independent rect. 22 13
530 250.95 atmosphere 995 43200 < th dose dependent rect. 22 11
535 250.96 temperature 20 1440 < th dose independent rect. 20 12
551 251.01 temperature 20 1440 > th dose independent rect. 23 9
592 251.09 atmosphere 995 43200 < th dose independent rect. 14 8
593 251.09 temperature 20 1440 < th dose independent rect. 23 9
638 251.18 temperature 30 1440 < th dose dependent sin 10 NA
723 251.36 wind 5 14400 > th dose independent rect. 20 20
728 251.37 atmosphere 995 43200 < th dose independent rect. 24 10
737 251.38 atmosphere 995 43200 < th dose dependent rect. 15 7
754 251.43 atmosphere 995 43200 < th dose independent rect. 2 7
755 251.43 temperature 20 270 > th dose independent rect. 12 21
783 251.49 atmosphere 995 43200 > th dose independent rect. 1 9
798 251.53 temperature 30 720 < th dose dependent sin 8 NA
826 251.60 atmosphere 995 43200 > th dose independent rect. 13 9
829 251.61 atmosphere 995 43200 > th dose independent rect. 3 6
872 251.73 atmosphere 995 43200 < th dose independent rect. 4 4
886 251.78 humidity 90 14400 > th dose independent rect. 18 1
892 251.79 wind 9 14400 > th dose independent rect. 20 15
963 252.04 humidity 90 43200 < th dose independent rect. 13 2
970 252.06 atmosphere 995 43200 < th dose dependent sin 10 NA
982 252.08 wind 9 14400 > th dose dependent rect. 20 15