Os11g0243300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ZF-HD homeobox protein Cys/His-rich dimerisation region domain containing protein.
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Os11g0243300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ZF-HD homeobox protein Cys/His-rich dimerisation region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.26 | 0.688 | 7.27 | -1.44 | 1.29 | 1.81 | 0.12 | -1.2 | -1.91 | 19.8 | 24.24 | 483 | -- | -- |
| 214.7 | 0.682 | 7.25 | -1.25 | 1.29 | 1.72 | -0.0984 | -- | -1.84 | 19.8 | 24.4 | 482 | -- | -- |
| 214.29 | 0.682 | 7.27 | -1.42 | 1.28 | 1.8 | -- | -1.06 | -1.9 | 19.8 | 24.3 | 482 | -- | -- |
| 214.69 | 0.682 | 7.25 | -1.25 | 1.3 | 1.71 | -- | -- | -1.85 | 19.8 | 24.35 | 482 | -- | -- |
| 272.06 | 0.768 | 7.27 | -1.84 | -- | 3 | -- | -2.44 | -2.08 | -- | 24.5 | 529 | -- | -- |
| 265.06 | 0.763 | 7.22 | -0.91 | 2.05 | -- | 0.742 | -- | -1.67 | 19.2 | -- | -- | -- | -- |
| 266.51 | 0.765 | 7.22 | -0.926 | 2.05 | -- | -- | -- | -1.67 | 19.2 | -- | -- | -- | -- |
| 276.26 | 0.774 | 7.24 | -1.46 | -- | 2.71 | -- | -- | -1.96 | -- | 24.4 | 527 | -- | -- |
| 253.21 | 0.741 | 7.2 | -- | 1.47 | 1.39 | -- | -- | -1.64 | 19.7 | 25.15 | 452 | -- | -- |
| 488.13 | 1.03 | 7.18 | -0.963 | -- | -- | -- | -- | -1.7 | -- | -- | -- | -- | -- |
| 289.12 | 0.795 | 7.2 | -- | 2.06 | -- | -- | -- | -1.57 | 19.2 | -- | -- | -- | -- |
| 330.42 | 0.847 | 7.19 | -- | -- | 2.48 | -- | -- | -1.76 | -- | 24.65 | 521 | -- | -- |
| 512.6 | 1.06 | 7.15 | -- | -- | -- | -- | -- | -1.6 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 213.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 11 |
| 2 | 213.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 3 | 213.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 6 | 214.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 16 |
| 19 | 214.81 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 16 |
| 30 | 215.25 | temperature | 10 | 270 | > th | dose dependent | sin | 19 | NA |
| 49 | 215.61 | temperature | 25 | 720 | > th | dose dependent | sin | 3 | NA |
| 59 | 215.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 66 | 215.87 | temperature | 20 | 720 | > th | dose dependent | sin | 1 | NA |
| 69 | 215.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 15 |
| 95 | 216.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 226 | 218.44 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 231 | 218.54 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 20 |
| 248 | 218.78 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 9 | 16 |
| 286 | 219.18 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 13 | 7 |
| 295 | 219.29 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 309 | 219.43 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 15 | 5 |
| 322 | 219.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 341 | 219.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 386 | 220.19 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 15 | 5 |
| 388 | 220.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 10 |
| 417 | 220.40 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 425 | 220.59 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 7 |
| 452 | 220.82 | atmosphere | 1005 | 270 | > th | dose independent | sin | 18 | NA |
| 460 | 220.91 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 17 |
| 510 | 221.27 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 511 | 221.27 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 545 | 221.48 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 577 | 221.68 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 579 | 221.69 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 675 | 222.33 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 14 |
| 681 | 222.35 | radiation | 40 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 690 | 222.38 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 16 | 9 |
| 744 | 222.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 747 | 222.64 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 748 | 222.64 | radiation | 40 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 768 | 222.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 772 | 222.67 | radiation | 40 | 720 | > th | dose dependent | no | NA | NA |
| 940 | 222.72 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 951 | 222.75 | radiation | 40 | 720 | > th | dose dependent | sin | 22 | NA |
| 964 | 222.78 | radiation | 40 | 720 | > th | dose dependent | rect. | 14 | 23 |