BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0243300 Os11g0243300|Os11g0243300
(383 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0243300 ZF-HD homeobox protein Cys/His-rich dimerisati... 449 e-126
Os12g0208900 ZF-HD homeobox protein Cys/His-rich dimerisati... 113 2e-25
Os08g0479400 Similar to Hydroxyproline-rich glycoprotein DZ... 99 5e-21
Os09g0466400 Similar to ZF-HD homeobox protein 96 5e-20
Os09g0414600 Similar to ZF-HD homeobox protein (Fragment) 78 1e-14
Os04g0434500 ZF-HD homeobox protein Cys/His-rich dimerisati... 77 3e-14
Os08g0438400 ZF-HD homeobox protein Cys/His-rich dimerisati... 76 5e-14
Os01g0635550 ZF-HD homeobox protein Cys/His-rich dimerisati... 75 1e-13
Os05g0579300 ZF-HD homeobox protein Cys/His-rich dimerisati... 74 1e-13
Os02g0706600 ZF-HD homeobox protein Cys/His-rich dimerisati... 72 5e-13
Os08g0438100 Similar to ZF-HD homeobox protein 72 7e-13
Os03g0718500 ZF-HD homeobox protein Cys/His-rich dimerisati... 68 1e-11
Os11g0128300 Similar to ZF-HD homeobox protein (Fragment) 68 1e-11
>Os11g0243300 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 383
Score = 449 bits (1156), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/383 (63%), Positives = 244/383 (63%)
Query: 1 MVSILQLQTRTEXXXXXXXXXXXTRIFAVRRXXXXXXXXXXXXXXXXXXRMDLSGAQGEL 60
MVSILQLQTRTE TRIFAVRR RMDLSGAQGEL
Sbjct: 1 MVSILQLQTRTEASPASSASAAATRIFAVRRQQQEQEGEEEEEEFEFQERMDLSGAQGEL 60
Query: 61 PIPMHASAAASPFXXXXXXXXXXXXXVVELHRHEHVGNNGQAMAMASPPPTNVAVAAEQE 120
PIPMHASAAASPF VVELHRHEHVGNNGQAMAMASPPPTNVAVAAEQE
Sbjct: 61 PIPMHASAAASPFAGMGAHGGAGGGHVVELHRHEHVGNNGQAMAMASPPPTNVAVAAEQE 120
Query: 121 GSPXXXXXXXXXXXXXXXXXXXXXYRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALK 180
GSP YRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALK
Sbjct: 121 GSPVAGKKRGGMAVVGGGGGVAVKYRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALK 180
Query: 181 CSACGCHRNFHRKEADDLDADSCXXXXXXXXXXXXXXXXXXXXXXXXKNGGGLLVXXXXX 240
CSACGCHRNFHRKEADDLDADSC KNGGGLLV
Sbjct: 181 CSACGCHRNFHRKEADDLDADSCAAALRAAAGRHHHLLGPALPHHHHKNGGGLLVAGGDP 240
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXQIIMPLNMIHTSESDEMDXXXXXXXXXXXXXXXX 300
QIIMPLNMIHTSESDEMD
Sbjct: 241 YGAAYAAARALPPPPPPPPHGHHHHHQIIMPLNMIHTSESDEMDVSGGGGGVGRGGGSSS 300
Query: 301 XXXXXFRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLKHAVGDVTV 360
FRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLKHAVGDVTV
Sbjct: 301 SSKKRFRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLKHAVGDVTV 360
Query: 361 AVMSDHLTSKIKGVKTEEIKKGV 383
AVMSDHLTSKIKGVKTEEIKKGV
Sbjct: 361 AVMSDHLTSKIKGVKTEEIKKGV 383
>Os12g0208900 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 311
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 75/144 (52%), Gaps = 21/144 (14%)
Query: 53 LSGAQGELPIPMHASAAASPFXXXXXXXXXXXXXVVELHRHEHVGNNGQAMAMASPPPTN 112
L A+GELP+PMHA AASP+ + PPT
Sbjct: 20 LQQARGELPLPMHA--AASPYLGLHHDHHHHHGGGGGGGGMNGRHMS---------PPTP 68
Query: 113 VAVAAEQEGSPXXXXXXXXXXXXXXXXXXXXXYRECLKNHAAAIGGNATDGCGEFMPSGE 172
A A E + YRECLKNHAAAIGG+ATDGCGEFMP GE
Sbjct: 69 PAAAEESKAV----------VVVSSSATAAARYRECLKNHAAAIGGSATDGCGEFMPGGE 118
Query: 173 EGSLEALKCSACGCHRNFHRKEAD 196
EGSL+AL+CSACGCHRNFHRKE D
Sbjct: 119 EGSLDALRCSACGCHRNFHRKELD 142
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Query: 267 QIIMPLNMIHTSESDEMDXXXXXXXXXXXXXXXXXXXXXFRTKFTAEQKARMLEFAERVG 326
+++MPL+ +HTSESD+ FRTKFTAEQKARML FAE VG
Sbjct: 183 RMVMPLSAMHTSESDDAAARPGGGAAARKR---------FRTKFTAEQKARMLGFAEEVG 233
Query: 327 WRLQKLDDAMVHHFCQEIGVKRRVLKHAVG 356
WRLQKL+DA+V FCQE+GVKRRVLK+ G
Sbjct: 234 WRLQKLEDAVVQRFCQEVGVKRRVLKYGSG 263
>Os08g0479400 Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor
Length = 290
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 48/53 (90%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKEADD 197
YRECLKNHA IGG+A DGCGEFM SGEEGS++AL+C+ACGCHRNFHRKE++
Sbjct: 63 YRECLKNHAVGIGGHAVDGCGEFMASGEEGSIDALRCAACGCHRNFHRKESES 115
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 38/47 (80%)
Query: 306 FRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLK 352
FRTKFT EQK +ML FAER+GWR+QK D+A V FC+E+ VKR VLK
Sbjct: 229 FRTKFTQEQKDKMLAFAERLGWRIQKHDEAAVQQFCEEVCVKRHVLK 275
>Os09g0466400 Similar to ZF-HD homeobox protein
Length = 279
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 49/57 (85%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKEADDLDAD 201
YRECLKNHA IGG+A DGCGEFM +GEEG+++AL+C+AC CHRNFHRKE++ L +
Sbjct: 57 YRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHRNFHRKESESLAGE 113
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 306 FRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLK 352
FRTKFT EQK +ML FAERVGWR+QK D+A V FC E+GVKR VLK
Sbjct: 218 FRTKFTQEQKDKMLAFAERVGWRIQKHDEAAVQQFCDEVGVKRHVLK 264
>Os09g0414600 Similar to ZF-HD homeobox protein (Fragment)
Length = 109
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 41/51 (80%), Gaps = 2/51 (3%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFMPS--GEEGSLEALKCSACGCHRNFHRK 193
YRECLKNHAA++GG+A DGCGEFMPS +L+C+ACGCHRNFHR+
Sbjct: 41 YRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFHRR 91
>Os04g0434500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 283
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 43/51 (84%), Gaps = 4/51 (7%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKEA 195
Y+EC++NHAAA+GG A DGCGE+MP+ S ++LKC+ACGCHR+FHR+ A
Sbjct: 23 YKECMRNHAAAMGGQAFDGCGEYMPA----SPDSLKCAACGCHRSFHRRAA 69
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 35/47 (74%)
Query: 306 FRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLK 352
FRTKFT EQK RM EFAE+ GWR+ + DD + FC EIGVKR VLK
Sbjct: 166 FRTKFTPEQKERMREFAEKQGWRINRNDDGALDRFCVEIGVKRHVLK 212
>Os08g0438400 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 359
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%), Gaps = 2/51 (3%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFM--PSGEEGSLEALKCSACGCHRNFHRK 193
YRECLKNHAA++GG+A DGCGEFM P+ + +LKC+ACGCHRNFHR+
Sbjct: 39 YRECLKNHAASLGGHAVDGCGEFMPSPAADAADPASLKCAACGCHRNFHRR 89
>Os01g0635550 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 232
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 3/50 (6%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKE 194
Y ECL+NHAAA GG+ DGCGEFMP+ E E L C+ACGCHR+FHR++
Sbjct: 40 YHECLRNHAAASGGHVVDGCGEFMPASTE---EPLACAACGCHRSFHRRD 86
>Os05g0579300 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 255
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKE 194
Y ECL+NHAAA+GG+ DGC EFMP + + +ALKC+ACGCHR+FHRK+
Sbjct: 45 YHECLRNHAAAMGGHVVDGCREFMPMPGDAA-DALKCAACGCHRSFHRKD 93
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 39/47 (82%)
Query: 306 FRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLK 352
FRTKFT EQK +ML FAERVGWR+QK D+A+V FC ++GV+R+V K
Sbjct: 175 FRTKFTPEQKEQMLAFAERVGWRMQKQDEALVEQFCAQVGVRRQVFK 221
>Os02g0706600 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 456
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%)
Query: 306 FRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLK 352
FRTKFTAEQK RM EFA RVGWR+ K D A V FC ++GV RRVLK
Sbjct: 350 FRTKFTAEQKERMREFAHRVGWRIHKPDAAAVDAFCAQVGVSRRVLK 396
>Os08g0438100 Similar to ZF-HD homeobox protein
Length = 93
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 40/49 (81%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRK 193
Y EC +NHAA +GG+A DGC EF+ GEEG+ AL+C+ACGCHR+FHR+
Sbjct: 4 YGECRRNHAARMGGHAVDGCREFLAEGEEGTGGALRCAACGCHRSFHRR 52
>Os03g0718500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
containing protein
Length = 238
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKE 194
YREC++NHAA +G A DGC E+ P ++G L C+ACGCHRNFHRK+
Sbjct: 12 YRECMRNHAAKLGTYANDGCCEYTP--DDGHPAGLLCAACGCHRNFHRKD 59
>Os11g0128300 Similar to ZF-HD homeobox protein (Fragment)
Length = 105
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 145 YRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKEADDLDAD 201
YREC +NHAA+IGG+A DGC EFM SG EG+ AL C+ACGCHR+FHR+E + A+
Sbjct: 35 YRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREVEAAAAE 91
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,592,527
Number of extensions: 264418
Number of successful extensions: 680
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 22
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)