BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0162500 Os12g0162500|AK065995
(328 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0162500 Similar to BZIP-like protein 308 5e-84
Os11g0160500 BZIP-like protein 215 3e-56
Os07g0679500 Similar to Transcription factor RF2b 147 9e-36
Os03g0336200 Transcription factor RF2b 142 2e-34
Os09g0516200 Transcription factor RF2a. Splice isoform 2 142 5e-34
Os08g0543900 Similar to Transcription factor RF2b 131 6e-31
Os10g0531900 Similar to BZIP-like protein 129 4e-30
Os03g0127500 Eukaryotic transcription factor, DNA-binding d... 127 1e-29
Os04g0181300 87 2e-17
Os01g0756200 Similar to VirE2-interacting protein VIP1 74 1e-13
AF467732 73 2e-13
Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment) 72 5e-13
>Os12g0162500 Similar to BZIP-like protein
Length = 328
Score = 308 bits (788), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 181/328 (55%), Positives = 181/328 (55%)
Query: 1 MDGRFPLPPXXXXXXXXXXXXXXETFXXXXXXXXXXXXEGXXXXXXXXXXXXXXXXXAIS 60
MDGRFPLPP ETF EG AIS
Sbjct: 1 MDGRFPLPPASGGGRGHHRRAHSETFLRLPDADLLLDPEGDFSFSDLDFPSLSDDSPAIS 60
Query: 61 DXXXXXXXXXXXXXXXXXXXXXXXHMRSLSLDTAFFEGFSLQXXXXXXXXXXXXXXXXHK 120
D HMRSLSLDTAFFEGFSLQ HK
Sbjct: 61 DPTPPPPPPMAATPAPAPRPPGGAHMRSLSLDTAFFEGFSLQGGGGGGGGGGSGGSGGHK 120
Query: 121 RSGSMDGVNSPFEGESALSGGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSK 180
RSGSMDGVNSPFEGESALSGGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSK
Sbjct: 121 RSGSMDGVNSPFEGESALSGGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSK 180
Query: 181 ERKIKYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRD 240
ERKIKYTSELERKV RDTSGLTAENRELKLRLQSMEEQAKLRD
Sbjct: 181 ERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRD 240
Query: 241 ALNEALREEVQRLKIAAGQAPNMNGNPFNGGLXXXXXXXXXXXXXXXXXXXXLGGXXXXX 300
ALNEALREEVQRLKIAAGQAPNMNGNPFNGGL LGG
Sbjct: 241 ALNEALREEVQRLKIAAGQAPNMNGNPFNGGLQQQIPPYYTQQQQQQQQMPYLGGHHAQQ 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXDSMDFM 328
DSMDFM
Sbjct: 301 RHPSHQQSSSNGGQSLSGQSLNDSMDFM 328
>Os11g0160500 BZIP-like protein
Length = 200
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/148 (77%), Positives = 120/148 (81%), Gaps = 4/148 (2%)
Query: 125 MDGVNSPFEGESALSGGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKI 184
MDG +S FEGESA PDYAKKAMPA+R+AELAL+DPKRAKRILANRQSAARSKERKI
Sbjct: 1 MDGESSLFEGESAP----PDYAKKAMPADRLAELALLDPKRAKRILANRQSAARSKERKI 56
Query: 185 KYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNE 244
KYT ELERKV RDTSGLTAENRELKLRLQSMEEQAKLRDALN+
Sbjct: 57 KYTGELERKVQTLQTEATTLSTQLTLLQRDTSGLTAENRELKLRLQSMEEQAKLRDALND 116
Query: 245 ALREEVQRLKIAAGQAPNMNGNPFNGGL 272
ALREEVQRLKIAAGQ PNMNGN FNGGL
Sbjct: 117 ALREEVQRLKIAAGQVPNMNGNSFNGGL 144
>Os07g0679500 Similar to Transcription factor RF2b
Length = 330
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
Query: 146 AKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXX 205
AKKAM +E++AELA IDPKRAKRILANRQSAARSKERK +Y +ELERKV
Sbjct: 107 AKKAMSSEQLAELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLS 166
Query: 206 XXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQAPNMNG 265
RDT+GL+AEN ELK+RLQ+ME+QA+LRDALN+AL++EV+RLKIA G+ N
Sbjct: 167 AQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQEVERLKIATGEMAKSN- 225
Query: 266 NPFNGGL 272
+ +N G+
Sbjct: 226 DAYNTGM 232
>Os03g0336200 Transcription factor RF2b
Length = 329
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 101/148 (68%), Gaps = 2/148 (1%)
Query: 119 HKRSGSMDGVNSPFEGESALSGGLPDY--AKKAMPAERIAELALIDPKRAKRILANRQSA 176
H+ S S+DG + L + AKKAM E+++ELA IDPKRAKRILANRQSA
Sbjct: 87 HRHSSSVDGSGFFAAARKDAAASLAEVMEAKKAMTPEQLSELAAIDPKRAKRILANRQSA 146
Query: 177 ARSKERKIKYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQA 236
ARSKERK +Y +ELERKV RDT+GL+AEN ELK+RLQ+ME+QA
Sbjct: 147 ARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQA 206
Query: 237 KLRDALNEALREEVQRLKIAAGQAPNMN 264
+LRDALN+AL++E++RLK+A G+ N N
Sbjct: 207 QLRDALNDALKQELERLKLATGEMTNSN 234
>Os09g0516200 Transcription factor RF2a. Splice isoform 2
Length = 368
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 85/114 (74%)
Query: 146 AKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXX 205
AKKA+ A ++AELAL+DPKRAKRI ANRQSAARSKERK++Y +ELERKV
Sbjct: 153 AKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLS 212
Query: 206 XXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQ 259
RDTSGLT EN ELKLRLQ+ME+Q L+DALN+ L+ EVQRLK+A GQ
Sbjct: 213 AQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQ 266
>Os08g0543900 Similar to Transcription factor RF2b
Length = 464
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 81/113 (71%)
Query: 147 KKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXXX 206
KK M ER+AE+AL DPKR KRILANRQSAARSKERK++Y ELE KV
Sbjct: 305 KKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSA 364
Query: 207 XXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQ 259
RD++GL +N ELK+RLQ+ME+QA+LRDALNEAL EVQRLK+A G+
Sbjct: 365 QLTMLQRDSTGLATQNNELKIRLQAMEQQAQLRDALNEALTAEVQRLKLATGE 417
>Os10g0531900 Similar to BZIP-like protein
Length = 400
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 83/118 (70%)
Query: 143 PDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXX 202
P K+ M E++AE+AL DPKR KR+LANRQSAARSKER+++Y +ELE+KV
Sbjct: 227 PAEMKRIMADEKLAEMALADPKRVKRVLANRQSAARSKERRMRYIAELEQKVQILQTEAT 286
Query: 203 XXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQA 260
RD+SG+ +N ELK RLQSME+QA+LRDALNEAL EVQRLK+AA +
Sbjct: 287 TLSAQLTLLQRDSSGMATQNNELKFRLQSMEQQAQLRDALNEALTAEVQRLKLAANEV 344
>Os03g0127500 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 426
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 81/117 (69%)
Query: 143 PDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXX 202
P KK M E++AE+AL DPKR KR+LANRQSAARSKERK++Y +ELE+KV
Sbjct: 256 PSEMKKIMADEKLAEMALADPKRVKRVLANRQSAARSKERKMRYIAELEQKVQILQSEAT 315
Query: 203 XXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQ 259
RD++GL +N ELK RL +ME+QA+LRDALNEAL EVQRLK+A +
Sbjct: 316 NLSAQLTMMQRDSAGLATQNNELKFRLHAMEQQAQLRDALNEALTTEVQRLKLATAE 372
>Os04g0181300
Length = 426
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 130 SPFEGESALSGGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSE 189
SPF E A D KK + + ++E+ L DP+R KRIL NR SA +SKE+K+K+ E
Sbjct: 258 SPFAAELANVKFTEDEKKKIVMDKSLSEIVLTDPRRVKRILNNRASATKSKEKKMKHVGE 317
Query: 190 LERKVXXXXXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREE 249
L+RK+ R+ + L ++N ELK RLQ+M++ A+L DAL L E
Sbjct: 318 LQRKLQVLQSETTTLGAQVTVMQRNNNELVSQNNELKTRLQAMDQLAQLGDALTSRLAAE 377
Query: 250 VQRLKIAAGQA--PNM 263
Q L+ + PN+
Sbjct: 378 AQHLRAVVSEISDPNL 393
>Os01g0756200 Similar to VirE2-interacting protein VIP1
Length = 265
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 162 DPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLTAE 221
DPKR KRILANRQSA RS+ RK++Y SELER V + + LT
Sbjct: 137 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVG 196
Query: 222 NRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQAPNMNGNPFNGGL 272
N LK R+ ++ + +DA EALR+E++RL+ Q +GGL
Sbjct: 197 NSHLKQRIAALAQDKIFKDAHQEALRKEIERLR----QVYQQQNTKLSGGL 243
>AF467732
Length = 186
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 147 KKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXXX 206
KK M ER+AE+AL DPKR KRILANRQSAARSKERK++Y +LE KV
Sbjct: 98 KKIMANERLAEIALTDPKRVKRILANRQSAARSKERKMRYIQKLEHKVQVLQTEASTLSH 157
Query: 207 XXXXXXRDTSGLTAENRELKL 227
R T + +N ELKL
Sbjct: 158 SLKCLRR-TPWTSPQNNELKL 177
>Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment)
Length = 269
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 53/93 (56%)
Query: 162 DPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLTAE 221
DPKR KRILANRQSA RS+ RK++Y SELER V S LT
Sbjct: 140 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVG 199
Query: 222 NRELKLRLQSMEEQAKLRDALNEALREEVQRLK 254
N LK R+ ++ + +DA EAL++E++RL+
Sbjct: 200 NSHLKQRIAALAQDKIFKDAHQEALKKEIERLR 232
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,270,439
Number of extensions: 146864
Number of successful extensions: 535
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 12
Length of query: 328
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 227
Effective length of database: 11,762,187
Effective search space: 2670016449
Effective search space used: 2670016449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)