BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0136200 Os12g0136200|AK069493
(515 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0136200 WD40-like domain containing protein 766 0.0
Os11g0139500 RNA-binding region RNP-1 (RNA recognition moti... 371 e-103
Os10g0151800 RNA-binding region RNP-1 (RNA recognition moti... 310 2e-84
Os07g0180800 RNA-binding region RNP-1 (RNA recognition moti... 132 6e-31
Os04g0543200 RNA-binding region RNP-1 (RNA recognition moti... 111 1e-24
Os11g0250000 RNA-binding region RNP-1 (RNA recognition moti... 97 3e-20
AK119744 92 1e-18
AK108879 84 2e-16
Os04g0504800 Similar to Poly(A)-binding protein 84 2e-16
Os09g0115400 Similar to Poly(A)-binding protein 84 3e-16
Os08g0314800 Similar to Poly(A)-binding protein 82 1e-15
Os04g0449900 Similar to RNA Binding Protein 47 78 1e-14
Os04g0682400 RNA-binding region RNP-1 (RNA recognition moti... 74 2e-13
Os08g0492100 Paraneoplastic encephalomyelitis antigen famil... 71 2e-12
Os03g0569900 Similar to RNA Binding Protein 45 70 3e-12
Os03g0278500 Polyadenylate binding protein, human types 1, ... 68 2e-11
Os09g0565200 Similar to Nucleic acid-binding protein precursor 65 9e-11
>Os12g0136200 WD40-like domain containing protein
Length = 515
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/515 (76%), Positives = 396/515 (76%)
Query: 1 EPPRLPWNFELFKMPRRTDNAASANSVEPEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
EPPRLPWNFELFKMPRRTDNAASANSVEPEKS
Sbjct: 1 EPPRLPWNFELFKMPRRTDNAASANSVEPEKSEECLEFDDDEEEEVEEEEIEYEEIEEEI 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSKTKGVHQKDVTEKGKHAELLALP 120
GVSKTKGVHQKDVTEKGKHAELLALP
Sbjct: 61 EEEEVEEDEDVVEEVEEVDEEEDEEEEEESDETEGVSKTKGVHQKDVTEKGKHAELLALP 120
Query: 121 PHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAV 180
PHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAV
Sbjct: 121 PHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAV 180
Query: 181 KELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSA 240
KELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSA
Sbjct: 181 KELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSA 240
Query: 241 NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSASTSQVKSVYVK 300
NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSASTSQVKSVYVK
Sbjct: 241 NRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSASTSQVKSVYVK 300
Query: 301 NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYEL 360
NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYEL
Sbjct: 301 NLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYEL 360
Query: 361 DGQVLDCSLAKPPAADKKDDRVPLPSSNGAXXXXXXXXXXXXIMSVPGAYGAAPASTAQP 420
DGQVLDCSLAKPPAADKKDDRVPLPSSNGA IMSVPGAYGAAPASTAQP
Sbjct: 361 DGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQP 420
Query: 421 MLYAPRAPPGAAMVPMMLPDGRLVYVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
MLYAPRAPPGAAMVPMMLPDGRLVYVV
Sbjct: 421 MLYAPRAPPGAAMVPMMLPDGRLVYVVQQPGGQLPLASPPPQQAGHRSGSGGRHGGSGGR 480
Query: 481 XXXXXXXXXXXXPGAKRQRGDDNSSSRHKGRRRPY 515
PGAKRQRGDDNSSSRHKGRRRPY
Sbjct: 481 YGGGGGSSGSSRPGAKRQRGDDNSSSRHKGRRRPY 515
>Os11g0139500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 252
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/252 (76%), Positives = 194/252 (76%)
Query: 264 MSSPTFKLDSNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEK 323
MSSPTFKLDSNAPTVSWADPKNNDS STSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEK
Sbjct: 1 MSSPTFKLDSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEK 60
Query: 324 VVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVP 383
VVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVP
Sbjct: 61 VVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVP 120
Query: 384 LPSSNGAXXXXXXXXXXXXIMSVPGAYGAAPASTAQPMLYAPRAPPGAAMVPMMLPDGRL 443
LPSSNGA IMSVPGAYGAAPASTAQPMLYAPRAPPGAAMVPMMLPDGRL
Sbjct: 121 LPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPPGAAMVPMMLPDGRL 180
Query: 444 VYVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAKRQRGDDN 503
VYVV PGAKRQRGDDN
Sbjct: 181 VYVVQQPGGQLPLASPPPQQAGHRSGSGGRHGGSGSRYGGGGGSSGSSRPGAKRQRGDDN 240
Query: 504 SSSRHKGRRRPY 515
SSSRHKGRRRPY
Sbjct: 241 SSSRHKGRRRPY 252
>Os10g0151800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 310 bits (793), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/360 (46%), Positives = 242/360 (67%), Gaps = 30/360 (8%)
Query: 105 KDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DS 162
+D EK K ELLALPP GSEV++GG+ D + +DL LCE GE+ EVR+M+ K+ ++
Sbjct: 90 EDEEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKEN 149
Query: 163 RGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVV 222
+G+AFV F K A +A+++L++ + KG+ +R S SQAK++LF+GNVP ++D+ R ++
Sbjct: 150 KGFAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNII 209
Query: 223 EEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWA 281
+ GPGV+ ++ K + +RNRG+ FVEYYNHACA+YA+Q++S+P FK+D + TVSWA
Sbjct: 210 QGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWA 269
Query: 282 DPKNNDSASTS----QVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRY 337
+PK + S+ +S QVK++YVKNLP+N ++ ++K +FE HGE+ KVVLPP++ G+ +
Sbjct: 270 EPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDF 329
Query: 338 GFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDR---------VPLPSSN 388
GFVHF +RS A++A++ +E+YE+DGQVL+ S+AK P DKK D PLP
Sbjct: 330 GFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK-PLGDKKPDHSFKPGGAPNFPLPPYG 388
Query: 389 GAXXXXXXXXXXXXIMSVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDGRLVYVV 447
G + GAYG QPM+Y AP G MVPM+LPDGRL YV+
Sbjct: 389 G------------YMGDPYGAYGGGGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVL 436
>Os07g0180800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 650
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 17/267 (6%)
Query: 125 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRM----MRGKDDSRGYAFVNFRTKGLALKAV 180
EV+VGG+ D +D++ + GE+ EVRM + GK+ +GY FV +R A KA+
Sbjct: 237 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKN--KGYCFVRYRHAAQAKKAI 294
Query: 181 KELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSA 240
E N K+ GK R + +++F+GN+ W +D K ++++G + + +K S
Sbjct: 295 AEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSN 354
Query: 241 N--RNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSASTSQVKSVY 298
N NRG+ F+E A A +++S V+WA+P N+ QVKS++
Sbjct: 355 NPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDMQVKSIF 414
Query: 299 VKNLPKNVTQAQLKRLFEHHGEIEKVVLP---PSRGGHDNRYGFVHFKDRSMAMRALQNT 355
V +P + AQLK +F+ HG+IE VVL PS D + F+++ R A+ L++
Sbjct: 415 VDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRD--FAFINYITREAAISCLESF 472
Query: 356 ERYELDGQ----VLDCSLAKPPAADKK 378
++ E + SLAKP K+
Sbjct: 473 DKEEFSKNGSKVNIKVSLAKPAQQSKQ 499
>Os04g0543200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 774
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 146/291 (50%), Gaps = 33/291 (11%)
Query: 103 HQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRG--KD 160
H + V E K E EV+VGG+ D + DL+++ VGE+ EVR+M
Sbjct: 177 HHEMVKEHRKRKEF--------EVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTK 228
Query: 161 DSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRK 220
++G+AF+ + T A +AV EL N ++GK+ V+ S + LF+GN+ +WT + ++
Sbjct: 229 KNKGFAFLRYATVEQARRAVSELKNPSVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKE 288
Query: 221 VVEEVGPGVLKADLMKVSSANR---NRGYGFVEYYN--HACAEYARQEMSSPTFKLDSNA 275
++ G DL+ V +N NRGY +E+ A + R + F +D +A
Sbjct: 289 KLKSYGVENFD-DLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVDRSA 347
Query: 276 PTVSWAD--PKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLP---PSR 330
VS+AD P+ +D +QV++V++ LP + + ++K+ + +G IEKV L P+
Sbjct: 348 -KVSFADSYPEVDDEI-MAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAA 405
Query: 331 GGHDNRYGFVHFKDRSMAM---RALQNTERYELDGQV-----LDCSLAKPP 373
D +GFV F A+ + N+E E D + L L +PP
Sbjct: 406 KRKD--FGFVTFDTHDNAVACADGITNSEIGEGDSKAKVRARLSRPLQRPP 454
>Os11g0250000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 94
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 58/73 (79%)
Query: 293 QVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRAL 352
QVK++YVKNLP+N ++ ++K +FE HGE+ KVVLPP++ GH +GFVHF +RS A++A+
Sbjct: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAV 65
Query: 353 QNTERYELDGQVL 365
+ +E+YE +G V
Sbjct: 66 KGSEKYEFNGNVF 78
>AK119744
Length = 746
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 21/265 (7%)
Query: 118 ALPPHG---SEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRT 172
A P H + +YVG + V+ L L +G+V +R+ R R GYA+VN+ +
Sbjct: 39 AAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNS 98
Query: 173 KGLALKAVKELNNAKLKGKRIRVSSSQ--------AKNKLFIGNVPHSWTDDDFRKVVEE 224
KA++ELN +KGK R+ SQ + +FI N+ H+ +
Sbjct: 99 SEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 225 VGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPK 284
G +L + + N ++GYGFV Y A A + ++ L+ V PK
Sbjct: 159 FG-NILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHVNG--MLLNEKKVFVGHHIPK 214
Query: 285 NNDSASTSQVKS----VYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFV 340
+ +VK+ +YVKN+ +VT + + LFE HG+I + G +GFV
Sbjct: 215 KERMSKFEEVKANFTNIYVKNIDLDVTDDEFRELFEKHGDITSASIARDEQGKSRGFGFV 274
Query: 341 HFKDRSMAMRALQNTERYELDGQVL 365
++ A A++ E GQ L
Sbjct: 275 NYIKHEAASAAVEALNDTEFRGQKL 299
>AK108879
Length = 670
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKEL 183
+YVG + DV+ L + +G V +R+ R R GYA+VNF + +A++ L
Sbjct: 46 LYVGELHPDVTEAMLYEIFSQIGPVSSIRVCRDAITRRSLGYAYVNFHSPADCERAIESL 105
Query: 184 NNAKLKGKRIRVSSSQ--------AKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLM 235
N A +KG+ R+ SQ +FI N+ + + G +L ++
Sbjct: 106 NYALIKGQPCRLMWSQRDPALRRSGVGNIFIKNLDKTIDNKALHDTFSAFG-NILSCKVV 164
Query: 236 KVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSN--APTVSWADPKNNDSASTSQ 293
+RG+GFV Y A+ A +++ +S + ++ +Q
Sbjct: 165 -TDDQGASRGFGFVHYETREAADLAIDKVNGMLLNGIKVFVGHHISRKERISHLEELKAQ 223
Query: 294 VKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQ 353
+V++KNL + VT +L+ LFE GEI+ +L G +GF++F + A +A++
Sbjct: 224 FTNVFIKNLDEAVTDEELQALFEPFGEIQSAILQRDESGKSRGFGFINFVEHEDAQKAVE 283
Query: 354 NTERYELDGQ 363
E++G+
Sbjct: 284 ALNDVEVNGK 293
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 129/287 (44%), Gaps = 42/287 (14%)
Query: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDD---SRGYAFVNFRTKGLALKAVKE 182
+++ + + ++ L G ++ +++ DD SRG+ FV++ T+ A A+ +
Sbjct: 134 IFIKNLDKTIDNKALHDTFSAFGNILSCKVV--TDDQGASRGFGFVHYETREAADLAIDK 191
Query: 183 LNNAKLKGKRIRVSSSQAKNK--------------LFIGNVPHSWTDDDFRKVVEEVGPG 228
+N L G ++ V ++ + +FI N+ + TD++ + + E G
Sbjct: 192 VNGMLLNGIKVFVGHHISRKERISHLEELKAQFTNVFIKNLDEAVTDEELQALFEPFGE- 250
Query: 229 VLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN-- 286
+++ +++ + ++RG+GF+ + H A+ A + ++ +++ V A K+
Sbjct: 251 -IQSAILQRDESGKSRGFGFINFVEHEDAQKAVEALND--VEVNGKRIFVGRAQKKSERT 307
Query: 287 ------------DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 334
+ S ++YVKNL + VT+ QL+ F G I + + G
Sbjct: 308 EELRRQFEALKLERMSKFHGVNLYVKNLDEMVTEDQLRMEFTPFGSISSLRVMVDEKGVS 367
Query: 335 NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDR 381
+GFV F A RA+ ++G+ L +LA+ ++D+R
Sbjct: 368 RGFGFVCFSAPEEAARAISEMNGRMVNGKPLYVALAQ-----RRDER 409
>Os04g0504800 Similar to Poly(A)-binding protein
Length = 659
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKEL 183
+YVG + + V+ L L G+V+ VR+ R R GYA+VNF A +A++ L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 184 NNAKLKGKRIRV--------SSSQAKNKLFIGN----VPHSWTDDDFRKVVEEVGPGVLK 231
N A L GK IRV S +FI N + H D F G +
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAF------GNIL 154
Query: 232 ADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADP-----KNN 286
+ + +++G+GFV+Y A+ A + ++ L ++ P + P +
Sbjct: 155 SCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNG---MLINDKPV--YVGPFLRKQERE 209
Query: 287 DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRS 346
+S ++ +V+VKNL ++ T+ L ++F +G I V+ G +GF++FK
Sbjct: 210 NSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPD 269
Query: 347 MAMRALQNTERYELDGQVLDCSLAKPPAADKKDDR 381
A RA++ EL+G+ ++ A KK +R
Sbjct: 270 DAARAVE-----ELNGKKINDKEWYVGRAQKKSER 299
>Os09g0115400 Similar to Poly(A)-binding protein
Length = 662
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 124 SEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVK 181
+ +YVG + V L + VG VV VR+ R + R GYA+VN+ + A +A++
Sbjct: 40 TSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALE 99
Query: 182 ELNNAKLKGKRIRVSSSQ--------AKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKAD 233
LN + GK IR+ S +FI N+ S + G +L
Sbjct: 100 MLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG-NILSCK 158
Query: 234 LMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSASTSQ 293
+ ++ ++GYGFV+Y A+ A +++ ++ V K S Q
Sbjct: 159 V-ATDASGESKGYGFVQYERDEAAQAAIDKLNG--MLMNDKKVYVGPFIRKQERDNSPGQ 215
Query: 294 VK--SVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRA 351
VK +VYVKNL +N T+ LK +F G I V+ G +GFV+F+ A +A
Sbjct: 216 VKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQA 275
Query: 352 LQNTERYELDGQVLD 366
+Q EL+G+ D
Sbjct: 276 VQ-----ELNGKKFD 285
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 35/247 (14%)
Query: 161 DSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRV-----------SSSQAK-NKLFIGN 208
+S+GY FV + A A+ +LN + K++ V S Q K N +++ N
Sbjct: 166 ESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKN 225
Query: 209 VPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPT 268
+ + T+DD +++ + G + A +M+ R++ +GFV + + A A QE++
Sbjct: 226 LSENTTEDDLKEIFGKFGT-ITSAVVMR-EGDGRSKCFGFVNFESPDDAAQAVQELNGKK 283
Query: 269 FKLDSNAPTVSWADPKN--------------NDSASTSQVKSVYVKNLPKNVTQAQLKRL 314
F D V A K+ ++A Q ++Y+KNL +V +L+ L
Sbjct: 284 F--DDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLREL 341
Query: 315 FEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPA 374
F +G I + G GFV FK A RAL + + L +LA+
Sbjct: 342 FAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQ--- 398
Query: 375 ADKKDDR 381
+K+DR
Sbjct: 399 --RKEDR 403
>Os08g0314800 Similar to Poly(A)-binding protein
Length = 660
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 14/251 (5%)
Query: 122 HGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDD--SRGYAFVNFRTKGLALKA 179
+ +YVG + V L + VG VV VR+ R + S GYA+VNF + A +A
Sbjct: 37 QATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARA 96
Query: 180 VKELNNAKLKGKRIRV--------SSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLK 231
++ LN + GK IR+ S +FI N+ S + G +L
Sbjct: 97 LEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFG-NILS 155
Query: 232 ADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSAST 291
+ S ++GYGFV++ A+ A +++ D + + ++ S
Sbjct: 156 CKVATEMSG-ESKGYGFVQFELEEAAQNAISKLNGMLLN-DKKVYVGPFVRKQERENVSG 213
Query: 292 S-QVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMR 350
+ + +VYVKNL ++ T+ LK +F G I VV+ G +GFV+F++ A R
Sbjct: 214 NPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAAR 273
Query: 351 ALQNTERYELD 361
A+++ + D
Sbjct: 274 AVEDLNGKKFD 284
>Os04g0449900 Similar to RNA Binding Protein 47
Length = 387
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 126/277 (45%), Gaps = 38/277 (13%)
Query: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYAFVNFRTKGLALKAVK-- 181
++VG + + L P GEVV ++++R + S GY FV F + G A KA++
Sbjct: 67 IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYSHGSAEKALQNF 126
Query: 182 ------------ELNNAK--LKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGP 227
+LN A + KR V+S + +F+G++ TD+ ++
Sbjct: 127 TGHVMPNTDRPFKLNWASYSMGEKRSEVASDYS---IFVGDLAADVTDEMLMELFANKYR 183
Query: 228 GVLKADLMKVSSANRNRGYGFVEYYN-----HACAEYARQEMSSPTFKLDSNAPTVSWA- 281
V A ++ ++ R+RGYGFV + + HA E S+ ++ P S
Sbjct: 184 SVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTRPIRIGPATPRRSSGD 243
Query: 282 ----DPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRY 337
P ++D ST+ ++VYV L NV++ +L++ F +G++ V +P + +
Sbjct: 244 SGSSTPGHSDGDSTN--RTVYVGGLDPNVSEDELRKAFAKYGDVASVKIPLGK-----QC 296
Query: 338 GFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPA 374
GFV F R+ A ALQ + Q + S + P+
Sbjct: 297 GFVQFVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPS 333
>Os04g0682400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1008
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 123/277 (44%), Gaps = 43/277 (15%)
Query: 124 SEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKEL 183
S +Y+ + ++++ + L P G++ +V M + Y+ V + A KAV+ +
Sbjct: 597 SRLYITNLPRSMTADKMVNLFAPFGQITKVLM------NLEYSLVWYADAPSATKAVQHM 650
Query: 184 NNAKLKGKRIRV--------SSSQAKNK---------LFIGNVPHSWTDDDFRKVVEEVG 226
+ ++GKR+ V ++SQA K L++G VP S T+D F + G
Sbjct: 651 DGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFG 710
Query: 227 PGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNN 286
V++A + R + YG V + N +CA A + A V+ ++N
Sbjct: 711 R-VVQARMF------RFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESN 763
Query: 287 DS--ASTSQVKS----------VYVKNLPKNVTQAQLKRLFEHHGEIEKV-VLPPSRGGH 333
+ A TSQ+ S +YV +LP V +L LF G+I + V+ G
Sbjct: 764 AAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGV 823
Query: 334 DNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLA 370
+GFV F D A AL + Y LDG VL+ +A
Sbjct: 824 SKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIA 860
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 114/274 (41%), Gaps = 37/274 (13%)
Query: 124 SEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYAFVNFRTKGLALKAVK 181
S +YV + S + ++ L L P G++ R++ D ++GY F+ F A KA+
Sbjct: 501 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 560
Query: 182 ELNNAKLKGKRI-----------RVSSSQA-----KNKLFIGNVPHSWTDDDFRKVVEEV 225
+N A + G+ I +S+ Q K++L+I N+P S T D K+V
Sbjct: 561 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTAD---KMVNLF 617
Query: 226 GPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 285
P +++ N Y V Y + A A Q M + S N
Sbjct: 618 AP------FGQITKVLMNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTN 671
Query: 286 NDSASTSQVKSV-----YVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFV 340
A +K + YV +P ++T+ Q LF G + + +R RYG V
Sbjct: 672 ASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQ-----ARMFRFQRYGMV 726
Query: 341 HFKDRSMAMRALQNTERYELDGQVLDCSLAKPPA 374
F + S A A+ + + Y++ G +L +A PA
Sbjct: 727 RFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPA 760
>Os08g0492100 Paraneoplastic encephalomyelitis antigen family protein
Length = 362
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 125 EVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDS--RGYAFVNFRTKGLA---LKA 179
+++VGG+ D + D + GE+V+ +MR K S RG+ F+ + + +
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 180 VKELNNAKLKGKR-IRVSSSQAKN----KLFIGNVPHSWTDDDFRKVVEEVGPGVLKADL 234
+ E N +++ KR I S Q+K+ K+F+G +P + T+DDF+ ++ GP V+ +
Sbjct: 84 IHEFNGKQVEIKRTIPKDSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGP-VVDHQI 142
Query: 235 MKVSSANRNRGYGFVEY 251
M+ R+RG+GF+ +
Sbjct: 143 MRDHQTKRSRGFGFIVF 159
>Os03g0569900 Similar to RNA Binding Protein 45
Length = 402
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 118/279 (42%), Gaps = 35/279 (12%)
Query: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSR--GYAFVNFRTKGLALKAVKEL 183
+++G + + L GE++ +++R K + GY F+ F + +A + ++
Sbjct: 69 LWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGY 128
Query: 184 NNAKLKGK----RIRVSSSQAKNK---------LFIGNVPHSWTDDDFRKVVEEVGPGVL 230
N + ++ ++S A K +F+G++ TD + + V
Sbjct: 129 NGQMMPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVK 188
Query: 231 KADLMKVSSANRNRGYGFVEY-----YNHACAEYARQEMSSPTFKLD----------SNA 275
A ++ S R++GYGFV++ A E Q SS ++
Sbjct: 189 GAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMNGQYCSSRPMRIGPASNKKNIGGQQQ 248
Query: 276 PTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDN 335
P+ ++ + + DS S +V+V L +VT LK+ F +GE+ V +P +
Sbjct: 249 PSATYQNTQGTDSDSDPNNTTVFVGGLDPSVTDEVLKQAFSPYGELVYVKIPVGK----- 303
Query: 336 RYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPA 374
R GFV + +R+ A A++ +L GQ + S + P
Sbjct: 304 RCGFVQYSNRASAEEAIRMLNGSQLGGQSIRLSWGRSPG 342
>Os03g0278500 Polyadenylate binding protein, human types 1, 2, 3, 4 family
protein
Length = 647
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 24/269 (8%)
Query: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMR--GKDDSRGYAFVNFRTKGLALKAVKEL 183
+YVG + V E L + +G + VR+ R +S Y +VN+ ++ A A+++L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 184 NNAKLKGKRIRVSSSQ--------AKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLM 235
N++ + K IRV S +F+ N+ + +++ + G +L +
Sbjct: 100 NHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFG-DILSCKVA 158
Query: 236 KVSSANRNRGYGFVEYYNHACAEYARQEMSSPTF---KLDSNAPTVSWADPKNNDSASTS 292
K + +RGYGFV++ A+ + Q +++ F +L NND T+
Sbjct: 159 K-NEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTN 217
Query: 293 QVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRAL 352
+Y+KNL ++T+ +K F +G + V + G +GFV F++ A RA
Sbjct: 218 ----LYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRA- 272
Query: 353 QNTERYELDGQVLDCSLAKPPAADKKDDR 381
+ ++G +L A KK +R
Sbjct: 273 ----KESMNGMLLGSKTLYVARAQKKAER 297
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 30/272 (11%)
Query: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD-DSRGYAFVNFRTKGLALKAVKELN 184
V+V ++ V + L+ L G+++ ++ + +D SRGY FV F + A +++ LN
Sbjct: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLN 187
Query: 185 NAKLKGKRIRVSSSQAKNK-----------LFIGNVPHSWTDDDFRKVVEEVGPGVLKAD 233
N+ G+++ V++ K++ L++ N+ T++ + + G V+
Sbjct: 188 NSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGL-VISVK 246
Query: 234 LMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWA------------ 281
+MK ++G+GFV + N A+ A++ M+ L S V+ A
Sbjct: 247 IMKRDDGT-SKGFGFVSFQNPESAKRAKESMNG--MLLGSKTLYVARAQKKAERKQYLQR 303
Query: 282 --DPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGF 339
+ K N+ + S +VY+KN+ V L+ F G I + G +GF
Sbjct: 304 LHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGF 363
Query: 340 VHFKDRSMAMRALQNTERYELDGQVLDCSLAK 371
V + A A+ N G+ L ++A+
Sbjct: 364 VCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQ 395
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 21/148 (14%)
Query: 120 PPHGSEVYVGGISSDVSSEDLKRLCEPVG--EVVEVRMMRGKDDSRGYAFVNFRTKGLAL 177
PP ++VYVG + D+ SE L +L E G EV EV R D SRG+ FV T A
Sbjct: 139 PPEEAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAE 198
Query: 178 KAVKELNNAKLKGKRIRVSSSQAKN--------------KLFIGNVPHSWTDDDFR--KV 221
KAV+ + + G+ + V+ + + ++++GN+P W DD R ++
Sbjct: 199 KAVEMFHRYDVDGRLLTVNKAAPRGARVERPPRQFGPSFRIYVGNLP--WQVDDSRLVQL 256
Query: 222 VEEVGPGVLKADLMKVSSANRNRGYGFV 249
E G V+ A ++ R+RG+GFV
Sbjct: 257 FSEHG-KVVDARVVYDRETGRSRGFGFV 283
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,841,233
Number of extensions: 544114
Number of successful extensions: 1941
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 1914
Number of HSP's successfully gapped: 24
Length of query: 515
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 410
Effective length of database: 11,553,331
Effective search space: 4736865710
Effective search space used: 4736865710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)