Os11g0139500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os11g0139500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.12 | 0.346 | 11.1 | 0.146 | 0.595 | -1.01 | 0.356 | 2.6 | -0.294 | 3.83 | 94.38 | 175 | -- | -- |
| 57.24 | 0.352 | 11.1 | 0.179 | 0.654 | -0.855 | 1.03 | -- | -0.305 | 4.24 | 93.64 | 184 | -- | -- |
| 54.4 | 0.344 | 11.1 | 0.135 | 0.586 | -0.996 | -- | 2.95 | -0.295 | 3.67 | 94.41 | 181 | -- | -- |
| 58.96 | 0.358 | 11.1 | 0.132 | 0.584 | -1.21 | -- | -- | -0.289 | 3.7 | 94.69 | 184 | -- | -- |
| 70.28 | 0.39 | 11.1 | 0.152 | -- | -0.352 | -- | 3.31 | -0.236 | -- | 94.46 | 175 | -- | -- |
| 64.01 | 0.375 | 11.1 | 0.132 | 0.458 | -- | 0.656 | -- | -0.229 | 3.76 | -- | -- | -- | -- |
| 65.05 | 0.378 | 11.1 | 0.122 | 0.46 | -- | -- | -- | -0.232 | 3.23 | -- | -- | -- | -- |
| 74.26 | 0.401 | 11.1 | 0.132 | -- | -0.917 | -- | -- | -0.234 | -- | 95.74 | 184 | -- | -- |
| 59.45 | 0.359 | 11.1 | -- | 0.584 | -1.22 | -- | -- | -0.297 | 3.73 | 94.72 | 184 | -- | -- |
| 77.07 | 0.41 | 11.1 | 0.142 | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
| 65.44 | 0.378 | 11.1 | -- | 0.463 | -- | -- | -- | -0.246 | 3.23 | -- | -- | -- | -- |
| 74.72 | 0.403 | 11.1 | -- | -- | -0.929 | -- | -- | -0.248 | -- | 95.79 | 184 | -- | -- |
| 77.6 | 0.411 | 11.1 | -- | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.15 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 2 | 52.24 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 8 | 53.00 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 13 | 53.46 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 14 | 53.46 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 15 | 53.66 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 17 | 53.81 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 19 | 53.82 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 8 |
| 25 | 54.02 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 26 | 54.04 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 30 | 54.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 19 |
| 37 | 54.23 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 52 | 54.42 | humidity | 90.0 | 270 | < th | dose independent | rect. | 20 | 5 |
| 57 | 54.45 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 1 | 6 |
| 70 | 54.60 | precipitation | 0.1 | 270 | < th | dose independent | sin | 10 | NA |
| 72 | 54.60 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 10 | NA |
| 77 | 54.64 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 80 | 54.65 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 10 |
| 90 | 54.73 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 95 | 54.75 | humidity | 90.0 | 270 | < th | dose independent | rect. | 19 | 12 |
| 98 | 54.79 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 109 | 54.83 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 20 | 5 |
| 115 | 54.88 | humidity | 90.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 157 | 55.04 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 158 | 55.05 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 170 | 55.09 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 10 |
| 173 | 55.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 174 | 55.10 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 175 | 55.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 184 | 55.13 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 197 | 55.17 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 205 | 55.21 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 218 | 55.25 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 22 | 5 |
| 244 | 55.31 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 1 | 20 |
| 249 | 55.32 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 272 | 55.38 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 1 | 8 |
| 278 | 55.40 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 12 |
| 280 | 55.41 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 281 | 55.41 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 8 |
| 291 | 55.43 | radiation | 40.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 304 | 55.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 15 |
| 308 | 55.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 338 | 55.50 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 14 |
| 347 | 55.51 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 355 | 55.53 | precipitation | 0.1 | 270 | > th | dose independent | sin | 11 | NA |
| 415 | 55.60 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 18 | 9 |
| 445 | 55.64 | humidity | 90.0 | 270 | < th | dose independent | sin | 11 | NA |
| 460 | 55.67 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 3 |
| 467 | 55.69 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 472 | 55.70 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 485 | 55.72 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 491 | 55.73 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 524 | 55.80 | wind | 1.0 | 90 | > th | dose independent | rect. | 21 | 4 |
| 530 | 55.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 535 | 55.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 573 | 55.86 | humidity | 90.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 584 | 55.88 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 21 | 4 |
| 595 | 55.89 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 604 | 55.90 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 1 | 10 |
| 622 | 55.93 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 14 |
| 633 | 55.95 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 14 |
| 634 | 55.95 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 642 | 55.96 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 1 |
| 677 | 55.99 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 18 | 9 |
| 681 | 56.00 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 1 |
| 701 | 56.02 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 21 | 6 |
| 711 | 56.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 714 | 56.04 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 1 |
| 722 | 56.04 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 19 | 14 |
| 747 | 56.07 | atmosphere | 1005.0 | 90 | > th | dose independent | sin | 11 | NA |
| 759 | 56.08 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 6 |
| 762 | 56.08 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 768 | 56.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 769 | 56.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 771 | 56.09 | humidity | 90.0 | 30 | > th | dose dependent | sin | 7 | NA |
| 776 | 56.10 | wind | 5.0 | 270 | < th | dose independent | rect. | 20 | 4 |
| 787 | 56.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 797 | 56.12 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 1 | 16 |
| 803 | 56.13 | wind | 9.0 | 90 | < th | dose independent | rect. | 1 | 20 |
| 820 | 56.15 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 821 | 56.15 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 825 | 56.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 845 | 56.17 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 5 |
| 847 | 56.17 | radiation | 20.0 | 10 | < th | dose independent | rect. | 1 | 8 |
| 856 | 56.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 862 | 56.19 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 863 | 56.19 | atmosphere | 1000.0 | 30 | > th | dose dependent | sin | 9 | NA |
| 874 | 56.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 877 | 56.20 | humidity | 50.0 | 30 | > th | dose independent | rect. | 1 | 20 |
| 890 | 56.21 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 8 |
| 893 | 56.21 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 10 | NA |
| 895 | 56.21 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 2 |
| 917 | 56.23 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 931 | 56.24 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 22 | 4 |
| 936 | 56.24 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 1 | 14 |
| 942 | 56.25 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 4 |
| 943 | 56.25 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 4 |
| 944 | 56.25 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 4 |
| 947 | 56.25 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 4 |
| 948 | 56.25 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 4 |
| 964 | 56.25 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 4 |
| 978 | 56.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 7 |
| 983 | 56.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 988 | 56.26 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 991 | 56.27 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 4 |
| 998 | 56.27 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 4 |