BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0139500 Os11g0139500|AK120730
(252 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52660.1 | chr3:19522598-19524735 FORWARD LENGTH=472 166 8e-42
AT4G00830.1 | chr4:352782-354965 FORWARD LENGTH=496 154 3e-38
AT5G28390.1 | chr5:10342024-10342997 REVERSE LENGTH=181 138 2e-33
AT2G46780.1 | chr2:19229516-19231043 FORWARD LENGTH=337 56 1e-08
AT5G19350.1 | chr5:6518978-6521295 FORWARD LENGTH=426 55 3e-08
AT1G34140.1 | chr1:12433356-12434735 REVERSE LENGTH=408 52 2e-07
AT3G52150.1 | chr3:19342074-19343090 FORWARD LENGTH=254 51 4e-07
AT2G37220.1 | chr2:15634980-15636331 REVERSE LENGTH=290 51 5e-07
AT1G71770.1 | chr1:26990777-26993489 REVERSE LENGTH=683 51 5e-07
AT1G71800.1 | chr1:26999606-27001850 FORWARD LENGTH=462 50 8e-07
AT3G06970.1 | chr3:2199653-2201150 REVERSE LENGTH=318 50 1e-06
>AT3G52660.1 | chr3:19522598-19524735 FORWARD LENGTH=472
Length = 471
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 127/190 (66%), Gaps = 6/190 (3%)
Query: 1 MSSPTFKLDSNAPTVSWADPKNNDSVSTS--QVKSVYVKNLPKNVTQAQLKRLFEHHGEI 58
MS+P+FKLD NAPTVSWA+ ++ +S QVK++Y+KNLP+++TQ +LK LFEHHG+I
Sbjct: 235 MSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 294
Query: 59 EKVVLPPSR-GGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDD 117
KVV+PP++ G D+RYGFVH+ +R+ MRAL+NTERYE+DG +LDC+LAKP A K +
Sbjct: 295 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNT 354
Query: 118 RVPLPSSNGAXXXXXXXXXXXXIMSVP-GAYGAAPAST-AQPMLYA-PRAPPGAAMVPMM 174
+ P GA G AS +QP+++A A G +M+P+M
Sbjct: 355 NTVQNVQKSQLQPNYPPLLSYGMAPSPFGALGGFGASAYSQPLMHAGGHAAGGMSMMPIM 414
Query: 175 LPDGRLVYVV 184
LPDGR+ YV+
Sbjct: 415 LPDGRIGYVL 424
>AT4G00830.1 | chr4:352782-354965 FORWARD LENGTH=496
Length = 495
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 122/198 (61%), Gaps = 23/198 (11%)
Query: 1 MSSPTFKLDSNAPTVSWADPKNN--DSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEI 58
M FKL+ NAPTV+WADPK++ S + +QVK++YVKN+P+N + QLK LF+ HGE+
Sbjct: 259 MIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEV 318
Query: 59 EKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDR 118
K+V PP +GG + +GFVH+ +RS A++A+++TERYE++GQ L+ LAKP A K D
Sbjct: 319 TKIVTPPGKGGKRD-FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHD-- 375
Query: 119 VPLPSSNGAXXXXXXXXXXXXIMSVPGAYGAAP-----------ASTAQPMLYAPRA-PP 166
P S GA + G + AAP S +QPM+Y A P
Sbjct: 376 -PSSYSYGA-----APTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPT 429
Query: 167 GAAMVPMMLPDGRLVYVV 184
G MVPM+LPDGR+ YV+
Sbjct: 430 GMQMVPMLLPDGRVGYVL 447
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 33 SVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMAMRALQN 91
V++ LP++V + L+ L E GEI +V L R D++ Y FV FK + +A +A++
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 92 TERYELDGQVLDCSLAK 108
E G+ + CSL++
Sbjct: 177 LHSKEFKGKTIRCSLSE 193
>AT5G28390.1 | chr5:10342024-10342997 REVERSE LENGTH=181
Length = 180
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 109/188 (57%), Gaps = 56/188 (29%)
Query: 1 MSSPTFKLDSNAPTVSWADPKNNDS--VSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEI 58
MS+P+FKLD NAPTVSWA+ ++ S SQVK++Y+KNLP+++TQ +LK LFEHHG+I
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 59 EKVVLPPSR-GGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDD 117
KVV+PP++ G D+RYGFVH+ +R+ MRAL+NTERYE+D
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDA------------------ 102
Query: 118 RVPLPSSNGAXXXXXXXXXXXXIMSVPGAYGAAPASTAQPMLYA-PRAPPGAAMVPMMLP 176
++ +QP+++A A G +M+P+MLP
Sbjct: 103 ----------------------------------SAYSQPLMHAGGHAAGGMSMMPIMLP 128
Query: 177 DGRLVYVV 184
DGR+ YV+
Sbjct: 129 DGRIRYVL 136
>AT2G46780.1 | chr2:19229516-19231043 FORWARD LENGTH=337
Length = 336
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 23 NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEI-EKVVLPPSRGGHDNRYGFVHFKD 81
N++ + +++ ++V L + ++R FE GEI E VV+ G YGFV FK+
Sbjct: 13 NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72
Query: 82 RSMAMRALQNTERYELDGQVLDCSLA 107
AMRA QN +DG+ +C+LA
Sbjct: 73 AEAAMRACQNMNPV-IDGRRANCNLA 97
>AT5G19350.1 | chr5:6518978-6521295 FORWARD LENGTH=426
Length = 425
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 12 APTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD 71
AP ++ P +D T+ + V NL +NVT+ +LK+ F GE+ V +P ++G
Sbjct: 221 APVQAYVAPPESDVTCTT----ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKG--- 273
Query: 72 NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAAD 113
YG+V FK R A A+Q + + Q + S +K P D
Sbjct: 274 --YGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQD 313
>AT1G34140.1 | chr1:12433356-12434735 REVERSE LENGTH=408
Length = 407
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 33 SVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNT 92
+VYVKNL + T A LKRLF GEI V+ G R+GFV+F+ A+ A++
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE-- 177
Query: 93 ERYELDGQVLDCSLAKPPAADKKDDR 118
+++G V+D A +K +R
Sbjct: 178 ---KMNGVVVDEKELHVGRAQRKTNR 200
>AT3G52150.1 | chr3:19342074-19343090 FORWARD LENGTH=254
Length = 253
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 27 STSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKV-VLPPSRGGHDNRYGFVHFKDRSMA 85
S+ + VY+ N+P+ VT QL +L E HG +EKV V+ G R+GF K A
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDA 130
Query: 86 MRALQNTERYELDGQVLDCSLAKPPAADKKD 116
++ ++G+ + ++ + P A D
Sbjct: 131 NAVVEKLNGNTVEGREIKVNITEKPIASSPD 161
>AT2G37220.1 | chr2:15634980-15636331 REVERSE LENGTH=290
Length = 289
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 34 VYVKNLPKNVTQAQLKRLFEHHGEIEKV-VLPPSRGGHDNRYGFVHFKDRSMAMRALQNT 92
++V NLP NV AQL +LFE G +E V V+ G +GFV S A Q
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 93 ERYELDGQVLDCSLAKPP 110
YELDG+ L + PP
Sbjct: 153 NGYELDGRPLRVNAGPPP 170
>AT1G71770.1 | chr1:26990777-26993489 REVERSE LENGTH=683
Length = 682
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 15 VSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRY 74
V D ++S + +VYVKNLPK +T +LK+ F +G+I V+ + G+ +
Sbjct: 222 VRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSF 281
Query: 75 GFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDR 118
GFV+F A A++ L VL A+ KK DR
Sbjct: 282 GFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ-----KKSDR 320
>AT1G71800.1 | chr1:26999606-27001850 FORWARD LENGTH=462
Length = 461
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 27 STSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSR-GGHDNRYGFVHFKDRSMA 85
S+SQ + V+V N+P + T+ QL+ + G + L R G YGF +KD A
Sbjct: 4 SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63
Query: 86 MRALQNTERYELDGQVLDCSLAKPPAADKKDDRV 119
+ A +N + YE++G+ L A+ DK D+
Sbjct: 64 LSARRNLQSYEINGRQLRVDFAE---NDKGTDKT 94
>AT3G06970.1 | chr3:2199653-2201150 REVERSE LENGTH=318
Length = 317
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 29 SQVKSVYVKNLPKNVTQAQLKRLFEHHGEI-EKVVLPPSRGGHDNRYGFVHFKDRSMAMR 87
++V ++V NL T L+R FE G++ + V+ + G YGF+ F+D +R
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
Query: 88 ALQNTERYELDGQVLDCSLAKPPA 111
ALQN++ +DG+ +C+LA A
Sbjct: 69 ALQNSKPI-IDGRTTNCNLASAGA 91
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,570,479
Number of extensions: 153642
Number of successful extensions: 593
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 13
Length of query: 252
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 156
Effective length of database: 8,474,633
Effective search space: 1322042748
Effective search space used: 1322042748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)