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Os11g0250000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.013) R2 : 0.235
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.323 (0.0273) R2dN8 : 0.304 R2N8 : 0.235
σ : 0.244
deviance : 27.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.21 0.211 12.3 -0.0293 0.222 0.343 0.169 1.46 0.364 22.5 0.1476 4431 -- --
20.72 0.212 12.3 -0.00731 0.218 0.436 0.14 -- 0.359 22.5 0.5001 2882 -- --
20.33 0.21 12.3 -0.0353 0.221 0.344 -- 1.45 0.363 22.5 0.1366 4430 -- --
20.8 0.212 12.3 -0.0162 0.215 0.444 -- -- 0.357 22.5 0.5294 2813 -- --
23.04 0.224 12.3 -0.0451 -- 0.202 -- 1.49 0.356 -- 1.165e-05 6518 -- --
23.94 0.229 12.3 0.109 0.221 -- 0.189 -- 0.334 22.7 -- -- -- --
24.09 0.23 12.3 0.101 0.221 -- -- -- 0.334 22.6 -- -- -- --
23.63 0.226 12.3 -0.0113 -- 0.464 -- -- 0.357 -- 0.5802 2396 -- --
20.81 0.212 12.3 -- 0.215 0.437 -- -- 0.358 22.5 0.5635 2848 -- --
27.09 0.243 12.3 0.105 -- -- -- -- 0.335 -- -- -- -- --
24.36 0.231 12.3 -- 0.221 -- -- -- 0.323 22.6 -- -- -- --
23.61 0.226 12.3 -- -- 0.458 -- -- 0.358 -- 0.6046 2336 -- --
27.38 0.244 12.3 -- -- -- -- -- 0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.03 wind 5.0 14400 < th dose dependent rect. 1 2
2 18.03 wind 3.0 14400 < th dose dependent rect. 23 6
3 18.05 wind 1.0 14400 > th dose dependent rect. 23 5
4 18.06 wind 3.0 14400 < th dose dependent rect. 1 4
8 18.09 wind 1.0 14400 > th dose dependent rect. 1 2
30 18.26 wind 3.0 14400 < th dose independent rect. 22 6
31 18.27 wind 3.0 14400 < th dose independent rect. 24 2
49 18.38 precipitation 0.1 14400 > th dose independent rect. 17 1
55 18.39 wind 3.0 14400 < th dose dependent rect. 4 1
75 18.46 wind 3.0 14400 > th dose independent rect. 22 6
78 18.48 wind 3.0 14400 > th dose independent rect. 24 2
83 18.50 precipitation 0.1 14400 > th dose dependent rect. 5 12
103 18.57 precipitation 0.1 14400 > th dose independent rect. 7 10
106 18.58 precipitation 0.1 14400 < th dose independent rect. 7 10
108 18.58 precipitation 0.1 14400 < th dose dependent rect. 7 10
134 18.67 precipitation 0.1 14400 < th dose independent rect. 17 1
136 18.67 precipitation 0.1 14400 < th dose dependent rect. 17 1
151 18.72 precipitation 0.1 14400 > th dose independent rect. 9 8
160 18.73 precipitation 0.1 4320 > th dose dependent rect. 1 16
164 18.74 precipitation 0.1 14400 < th dose independent rect. 9 8
166 18.74 precipitation 0.1 14400 < th dose dependent rect. 9 8
184 18.80 humidity 80.0 14400 > th dose dependent rect. 13 1
193 18.83 precipitation 0.1 4320 > th dose independent rect. 1 16
200 18.85 precipitation 0.1 4320 < th dose independent rect. 1 16
203 18.85 precipitation 0.1 4320 < th dose dependent rect. 1 16
223 18.89 precipitation 0.1 14400 > th dose dependent rect. 18 2
230 18.90 humidity 80.0 14400 > th dose independent rect. 13 3
231 18.91 humidity 80.0 14400 > th dose independent rect. 13 1
252 18.94 precipitation 0.1 4320 > th dose dependent rect. 18 23
270 18.98 precipitation 0.1 14400 > th dose independent rect. 12 5
285 19.00 precipitation 0.1 14400 < th dose independent rect. 12 5
289 19.00 precipitation 0.1 14400 < th dose dependent rect. 12 5
295 19.00 precipitation 0.1 4320 > th dose dependent rect. 18 14
313 19.02 precipitation 0.1 4320 > th dose dependent rect. 18 12
326 19.04 humidity 80.0 14400 > th dose independent rect. 10 1
339 19.06 precipitation 0.1 14400 > th dose independent rect. 14 2
342 19.06 precipitation 0.1 14400 > th dose dependent rect. 14 2
344 19.06 precipitation 0.1 14400 > th dose dependent rect. 12 5
354 19.08 humidity 80.0 14400 > th dose independent rect. 10 6
373 19.10 precipitation 0.1 4320 > th dose independent rect. 3 11
374 19.10 precipitation 0.1 4320 < th dose independent rect. 3 11
375 19.10 humidity 80.0 14400 > th dose dependent rect. 13 4
379 19.10 precipitation 0.1 4320 < th dose dependent rect. 3 11
381 19.11 precipitation 0.1 14400 < th dose independent rect. 15 1
382 19.11 wind 1.0 14400 > th dose independent rect. 4 2
389 19.11 precipitation 0.1 14400 < th dose dependent rect. 15 1
434 19.16 humidity 80.0 14400 < th dose independent rect. 10 1
438 19.16 precipitation 0.1 4320 > th dose dependent sin 5 NA
475 19.20 precipitation 0.1 14400 < th dose independent sin 1 NA
476 19.20 humidity 80.0 14400 < th dose independent rect. 13 2
478 19.20 precipitation 0.1 14400 > th dose independent rect. 3 17
479 19.20 precipitation 0.1 14400 < th dose independent rect. 3 17
481 19.20 precipitation 0.1 14400 < th dose dependent sin 1 NA
484 19.20 precipitation 0.1 14400 < th dose dependent rect. 3 17
485 19.21 precipitation 0.1 14400 > th dose independent sin 1 NA
486 19.21 precipitation 0.1 4320 > th dose independent sin 4 NA
487 19.21 precipitation 0.1 4320 < th dose independent sin 4 NA
493 19.21 precipitation 0.1 14400 > th dose independent rect. 5 15
494 19.21 precipitation 0.1 14400 < th dose independent rect. 5 15
497 19.21 precipitation 0.1 4320 < th dose dependent sin 4 NA
503 19.21 precipitation 0.1 14400 < th dose dependent rect. 5 15
532 19.24 precipitation 0.1 4320 < th dose independent rect. 3 7
537 19.24 precipitation 0.1 4320 > th dose dependent rect. 3 7
538 19.24 precipitation 0.1 4320 < th dose dependent rect. 3 7
555 19.25 precipitation 0.1 4320 > th dose dependent rect. 3 5
560 19.26 precipitation 0.1 4320 > th dose independent rect. 3 5
561 19.26 precipitation 0.1 4320 < th dose independent rect. 3 5
563 19.26 precipitation 0.1 4320 > th dose independent rect. 3 7
565 19.26 precipitation 0.1 4320 > th dose dependent rect. 3 3
566 19.26 precipitation 0.1 4320 < th dose dependent rect. 3 5
601 19.29 precipitation 0.1 4320 > th dose independent rect. 3 3
623 19.30 humidity 80.0 14400 > th dose dependent rect. 16 1
631 19.31 wind 1.0 14400 < th dose independent rect. 3 4
644 19.32 precipitation 0.1 4320 < th dose independent rect. 3 3
647 19.32 humidity 80.0 14400 < th dose independent rect. 10 5
652 19.32 precipitation 0.1 4320 < th dose dependent rect. 3 3
653 19.32 humidity 80.0 14400 > th dose dependent rect. 9 8
663 19.34 wind 1.0 4320 > th dose independent rect. 18 1
671 19.34 precipitation 0.1 4320 > th dose dependent rect. 3 1
689 19.35 precipitation 0.1 4320 > th dose independent rect. 18 23
690 19.35 precipitation 0.1 4320 < th dose independent rect. 18 23
699 19.35 precipitation 0.1 4320 < th dose dependent rect. 18 23
802 19.45 precipitation 0.1 4320 > th dose dependent rect. 24 10
806 19.46 wind 9.0 14400 < th dose independent rect. 10 1
807 19.46 wind 9.0 14400 < th dose independent rect. 6 5
835 19.48 precipitation 0.1 4320 > th dose independent rect. 3 1
891 19.51 wind 3.0 14400 < th dose dependent sin 9 NA
942 19.55 precipitation 0.1 4320 < th dose independent rect. 3 1
949 19.55 precipitation 0.1 4320 < th dose dependent rect. 3 1
973 19.57 humidity 80.0 1440 < th dose independent rect. 11 1