BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0250000 Os11g0250000|J023121K12
(94 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00830.1 | chr4:352782-354965 FORWARD LENGTH=496 112 5e-26
AT3G52660.1 | chr3:19522598-19524735 FORWARD LENGTH=472 91 2e-19
AT5G28390.1 | chr5:10342024-10342997 REVERSE LENGTH=181 87 1e-18
AT1G71770.1 | chr1:26990777-26993489 REVERSE LENGTH=683 50 2e-07
AT1G22760.1 | chr1:8055599-8058799 FORWARD LENGTH=661 49 5e-07
AT4G34110.1 | chr4:16336732-16339892 FORWARD LENGTH=630 49 7e-07
AT1G02840.1 | chr1:626918-629583 FORWARD LENGTH=304 48 8e-07
AT4G02430.2 | chr4:1069186-1071313 FORWARD LENGTH=279 48 9e-07
AT2G23350.1 | chr2:9943209-9946041 FORWARD LENGTH=663 48 1e-06
AT2G22100.1 | chr2:9392397-9393545 REVERSE LENGTH=383 47 2e-06
AT1G34140.1 | chr1:12433356-12434735 REVERSE LENGTH=408 47 2e-06
AT4G19610.1 | chr4:10677482-10681623 FORWARD LENGTH=817 46 3e-06
AT1G49760.1 | chr1:18416740-18419753 FORWARD LENGTH=672 46 4e-06
AT2G36660.1 | chr2:15361476-15364398 REVERSE LENGTH=610 45 6e-06
>AT4G00830.1 | chr4:352782-354965 FORWARD LENGTH=496
Length = 495
Score = 112 bits (279), Expect = 5e-26, Method: Composition-based stats.
Identities = 50/70 (71%), Positives = 61/70 (87%), Gaps = 1/70 (1%)
Query: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAV 65
QVK +YVKN+PEN S E++KE+F++HGEVTK+V PP K G KRDFGFVH+AERSSALKAV
Sbjct: 290 QVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG-KRDFGFVHYAERSSALKAV 348
Query: 66 KGSEKYEFNG 75
K +E+YE NG
Sbjct: 349 KDTERYEVNG 358
>AT3G52660.1 | chr3:19522598-19524735 FORWARD LENGTH=472
Length = 471
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 3/75 (4%)
Query: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD--FGFVHFAERSSALK 63
QVK +Y+KNLP + ++E++K +FE HG++ KVV+PPAK G K D +GFVH+AER+S ++
Sbjct: 266 QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPG-KEDSRYGFVHYAERTSVMR 324
Query: 64 AVKGSEKYEFNGNVF 78
A+K +E+YE +G++
Sbjct: 325 ALKNTERYEIDGHML 339
>AT5G28390.1 | chr5:10342024-10342997 REVERSE LENGTH=181
Length = 180
Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 63/81 (77%), Gaps = 3/81 (3%)
Query: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD--FGFVHFAERSSALK 63
QVK +Y+KNLP + ++E++K +FE HG++ KVV+PPAK G K D +GFVH+AER+S ++
Sbjct: 32 QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPG-KEDSRYGFVHYAERTSVMR 90
Query: 64 AVKGSEKYEFNGNVFSLFIIY 84
A+K +E+YE + + +S +++
Sbjct: 91 ALKNTERYEIDASAYSQPLMH 111
>AT1G71770.1 | chr1:26990777-26993489 REVERSE LENGTH=683
Length = 682
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 10 IYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAVK 66
+YVKNLP+ + +++K+ F K+G+++ V+ + G+ R FGFV+F +A AV+
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 297
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 5 LQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKA 64
LQ +Y+KNL ++ + EK+KE+F ++G VT + G R FGFV ++ AL A
Sbjct: 339 LQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLA 398
Query: 65 VKGSEKYEFNGNV 77
+K E NG +
Sbjct: 399 MK-----EMNGKM 406
>AT1G22760.1 | chr1:8055599-8058799 FORWARD LENGTH=661
Length = 660
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVT--KVVLPPAKDGHKRDFGFVHFAERSSALK 63
Q +Y+KNL ++ EK+KE+F ++G VT KV+L P G R FGFV ++ AL+
Sbjct: 330 QGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP--QGMSRGFGFVAYSNPEEALR 387
Query: 64 AVKGSEKYEFNGNV 77
A+ E NG +
Sbjct: 388 ALS-----EMNGKM 396
>AT4G34110.1 | chr4:16336732-16339892 FORWARD LENGTH=630
Length = 629
Score = 48.5 bits (114), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 10 IYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAVKGSE 69
+YVKNL E+ + + +K F ++G++T V+ +G + FGFV+F A +AV+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 70 KYEFN 74
++F+
Sbjct: 277 GHKFD 281
>AT1G02840.1 | chr1:626918-629583 FORWARD LENGTH=304
Length = 303
Score = 48.1 bits (113), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 8 KTIYVKNLPENASKEKIKEIFEKHGEVTKVVL--PPAKDGHKRDFGFVHFAERSSALKAV 65
+T+YV NLP + + +++++F K+G V ++ L PP G + FV F + A A+
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPG----YAFVEFDDARDAEDAI 62
Query: 66 KGSEKYEFNGN 76
G + Y+F+G+
Sbjct: 63 HGRDGYDFDGH 73
>AT4G02430.2 | chr4:1069186-1071313 FORWARD LENGTH=279
Length = 278
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 8 KTIYVKNLPENASKEKIKEIFEKHGEVTKVVL--PPAKDGHKRDFGFVHFAERSSALKAV 65
+TIYV NLP + + +++++F K+G V ++ L PP G + FV F + A A+
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPG----YAFVEFEDARDADDAI 62
Query: 66 KGSEKYEFNGN 76
G + Y+F+G+
Sbjct: 63 YGRDGYDFDGH 73
>AT2G23350.1 | chr2:9943209-9946041 FORWARD LENGTH=663
Length = 662
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 5 LQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKA 64
++ +YVKNL E + +++K F ++G ++ V+ DG R FGFV+F A +A
Sbjct: 222 MKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARA 281
Query: 65 VKGSEKYEFN 74
V+ +F+
Sbjct: 282 VEALNGKKFD 291
>AT2G22100.1 | chr2:9392397-9393545 REVERSE LENGTH=383
Length = 382
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 8 KTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKD-GHKRDFGFVHFAERSSALKAVK 66
+ I+V+ L + + E +K FE +GE+T+ + KD G + FGFV F R A A+K
Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222
Query: 67 GSEKYEFNGNVFSL 80
EK +N V L
Sbjct: 223 NPEKRMYNRTVSCL 236
>AT1G34140.1 | chr1:12433356-12434735 REVERSE LENGTH=408
Length = 407
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 10 IYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAVK 66
+YVKNL E A+ +K +F + GE+T V+ +G R FGFV+F + +A+ A++
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
>AT4G19610.1 | chr4:10677482-10681623 FORWARD LENGTH=817
Length = 816
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 10 IYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAVK 66
I VKNLP++ ++++++ F + GE+T L + DG R FGF+ F A +A+K
Sbjct: 4 ICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIK 60
>AT1G49760.1 | chr1:18416740-18419753 FORWARD LENGTH=672
Length = 671
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 5 LQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKA 64
++ +YVKNL E+ S E++ ++F + G T V+ +G + FGFV+F A +A
Sbjct: 221 VKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARA 280
Query: 65 VKGSEKYEFNGNVF 78
V NG F
Sbjct: 281 VDA-----LNGKTF 289
>AT2G36660.1 | chr2:15361476-15364398 REVERSE LENGTH=610
Length = 609
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 7 VKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAVK 66
V ++VKNLPE+ + ++++F+K G + + +DG R +GFV F + +A A++
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQ 170
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,086,825
Number of extensions: 73254
Number of successful extensions: 469
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 17
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)