BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0250000 Os11g0250000|J023121K12
         (94 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0250000  RNA-binding region RNP-1 (RNA recognition moti...   191   1e-49
Os10g0151800  RNA-binding region RNP-1 (RNA recognition moti...   134   1e-32
Os12g0136200  WD40-like domain containing protein                  98   2e-21
Os11g0139500  RNA-binding region RNP-1 (RNA recognition moti...    96   4e-21

>Os11g0250000 RNA-binding region RNP-1 (RNA recognition motif) domain
          containing protein
          Length = 94

 Score =  191 bits (485), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MTFPLQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSS 60
          MTFPLQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSS
Sbjct: 1  MTFPLQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSS 60

Query: 61 ALKAVKGSEKYEFNGNVFSLFIIYHYLWNLVFFV 94
          ALKAVKGSEKYEFNGNVFSLFIIYHYLWNLVFFV
Sbjct: 61 ALKAVKGSEKYEFNGNVFSLFIIYHYLWNLVFFV 94



>Os10g0151800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 472

 Score =  134 bits (338), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/75 (88%), Positives = 69/75 (92%)

Query: 6   QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAV 65
           QVKTIYVKNLPENASKEKIKEIFE HGEVTKVVLPPAK G+KRDFGFVHFAERSSALKAV
Sbjct: 285 QVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFAERSSALKAV 344

Query: 66  KGSEKYEFNGNVFSL 80
           KGSEKYE +G V  +
Sbjct: 345 KGSEKYEIDGQVLEV 359



>Os12g0136200 WD40-like domain containing protein
          Length = 515

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 58/73 (79%)

Query: 6   QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAV 65
           QVK++YVKNLP+N ++ ++K +FE HGE+ KVVLPP++ GH   +GFVHF +RS A++A+
Sbjct: 293 QVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRAL 352

Query: 66  KGSEKYEFNGNVF 78
           + +E+YE +G V 
Sbjct: 353 QNTERYELDGQVL 365



>Os11g0139500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 252

 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 59/77 (76%)

Query: 6   QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAV 65
           QVK++YVKNLP+N ++ ++K +FE HGE+ KVVLPP++ GH   +GFVHF +RS A++A+
Sbjct: 30  QVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRAL 89

Query: 66  KGSEKYEFNGNVFSLFI 82
           + +E+YE +G V    +
Sbjct: 90  QNTERYELDGQVLDCSL 106



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,984,352
Number of extensions: 96540
Number of successful extensions: 487
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 4
Length of query: 94
Length of database: 17,035,801
Length adjustment: 63
Effective length of query: 31
Effective length of database: 13,746,319
Effective search space: 426135889
Effective search space used: 426135889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)