Os04g0543200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0543200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.62 | 0.186 | 11.2 | 0.611 | 0.101 | -0.551 | 0.138 | 2.88 | -0.0254 | 16.7 | 26.3 | 991 | -- | -- |
| 17.33 | 0.194 | 11.3 | 0.0637 | 0.0736 | -0.261 | 0.069 | -- | -0.13 | 15.7 | 25.5 | 1053 | -- | -- |
| 15.67 | 0.184 | 11.2 | 0.617 | 0.105 | -0.56 | -- | 2.96 | -0.0274 | 16.7 | 26.4 | 985 | -- | -- |
| 17.33 | 0.194 | 11.3 | 0.0595 | 0.0751 | -0.251 | -- | -- | -0.128 | 14.7 | 25.6 | 1077 | -- | -- |
| 16.14 | 0.187 | 11.2 | 0.646 | -- | -0.548 | -- | 2.8 | -0.011 | -- | 26.2 | 1057 | -- | -- |
| 19.28 | 0.206 | 11.3 | -0.00499 | 0.118 | -- | -0.0172 | -- | -0.146 | 13.3 | -- | -- | -- | -- |
| 19.28 | 0.206 | 11.3 | -0.00555 | 0.118 | -- | -- | -- | -0.146 | 13.4 | -- | -- | -- | -- |
| 17.61 | 0.195 | 11.3 | 0.0693 | -- | -0.265 | -- | -- | -0.126 | -- | 25.4 | 1124 | -- | -- |
| 17.43 | 0.194 | 11.3 | -- | 0.0769 | -0.235 | -- | -- | -0.139 | 14.8 | 25.8 | 1072 | -- | -- |
| 20.13 | 0.21 | 11.3 | -0.0102 | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
| 19.28 | 0.205 | 11.3 | -- | 0.118 | -- | -- | -- | -0.146 | 13.4 | -- | -- | -- | -- |
| 17.73 | 0.196 | 11.3 | -- | -- | -0.255 | -- | -- | -0.135 | -- | 25.4 | 1106 | -- | -- |
| 20.13 | 0.209 | 11.3 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.02 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 9 | 15.71 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 14 | 15.82 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 23 | 15.89 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 33 | 16.01 | temperature | 25.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 42 | 16.05 | humidity | 80.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 47 | 16.06 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 65 | 16.14 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 88 | 16.18 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 90 | 16.19 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 104 | 16.24 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 110 | 16.27 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 111 | 16.28 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 123 | 16.28 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 200 | 16.35 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 4 |
| 262 | 16.39 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 267 | 16.40 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 294 | 16.42 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 299 | 16.42 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 300 | 16.43 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 310 | 16.44 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 322 | 16.45 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 13 |
| 323 | 16.45 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 342 | 16.47 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 380 | 16.49 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 415 | 16.53 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 427 | 16.55 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 430 | 16.55 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 437 | 16.56 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 457 | 16.57 | humidity | 80.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 490 | 16.61 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 24 | 6 |
| 493 | 16.61 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 8 |
| 495 | 16.61 | wind | 3.0 | 30 | < th | dose dependent | rect. | 24 | 6 |
| 518 | 16.62 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 532 | 16.63 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 13 |
| 542 | 16.64 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 546 | 16.65 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 16 |
| 547 | 16.65 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 22 |
| 548 | 16.65 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 554 | 16.66 | wind | 3.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 555 | 16.66 | wind | 3.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 556 | 16.66 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 567 | 16.66 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 575 | 16.67 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 584 | 16.67 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 16 | 11 |
| 589 | 16.68 | humidity | 80.0 | 720 | > th | dose independent | rect. | 14 | 17 |
| 615 | 16.70 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 616 | 16.70 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 640 | 16.71 | humidity | 80.0 | 720 | < th | dose independent | sin | 16 | NA |
| 654 | 16.71 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 11 |
| 670 | 16.71 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 21 |
| 693 | 16.72 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 13 |
| 695 | 16.72 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 707 | 16.72 | wind | 9.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 731 | 16.74 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 735 | 16.74 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 15 |
| 751 | 16.75 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 752 | 16.75 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 792 | 16.77 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 11 |
| 794 | 16.77 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 14 |
| 810 | 16.77 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 815 | 16.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 817 | 16.78 | wind | 7.0 | 10 | < th | dose independent | rect. | 6 | 10 |
| 832 | 16.78 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 21 |
| 854 | 16.79 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 938 | 16.81 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 945 | 16.81 | humidity | 80.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 955 | 16.81 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 963 | 16.81 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 980 | 16.81 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 15 |