BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0118400 Os12g0118400|AK111804
(556 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0118400 Similar to Inwardly rectifying potassium chann... 1046 0.0
Os11g0119100 Alpha/beta hydrolase fold-1 domain containing ... 543 e-154
Os03g0399300 Similar to Inwardly rectifying potassium chann... 135 1e-31
Os07g0175400 Cation channel, non-ligand gated family protein 124 2e-28
Os01g0648000 Similar to AKT1-like potassium channel 105 6e-23
Os02g0245800 Similar to Inward rectifying shaker K+ channel 102 5e-22
Os01g0756700 Similar to Potassium channel (Fragment) 100 4e-21
Os01g0210700 Similar to Potassium channel (Fragment) 98 2e-20
Os01g0718700 94 3e-19
Os06g0254200 90 6e-18
Os04g0117500 89 1e-17
Os01g0647700 Epoxide hydrolase family protein 83 5e-16
>Os12g0118400 Similar to Inwardly rectifying potassium channel subunit
Length = 556
Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/556 (94%), Positives = 526/556 (94%)
Query: 1 ILFIATLGRLVARRRWPSRCRQFYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLF 60
ILFIATLGRLVARRRWPSRCRQFYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLF
Sbjct: 1 ILFIATLGRLVARRRWPSRCRQFYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLF 60
Query: 61 NLSLTAYIIGNMTNPVVHGTSRTRKFLIRSMPMHLPRSLQYPPSTPHPLHSTAFSHSLRP 120
NLSLTAYIIGNMTNPVVHGTSRTRKFLIRSMPMHLPRSLQYPPSTPHPLHSTAFSHSLRP
Sbjct: 61 NLSLTAYIIGNMTNPVVHGTSRTRKFLIRSMPMHLPRSLQYPPSTPHPLHSTAFSHSLRP 120
Query: 121 RRPNGPPPAFASAEFPGSVPDSAQMPPXXXXXXSVAGIDQXXXXXXXXXXXXXSSFYEIN 180
RRPNGPPPAFASAEFPGSVPDSAQMPP SVAGIDQ SSFYEIN
Sbjct: 121 RRPNGPPPAFASAEFPGSVPDSAQMPPRRRRRRSVAGIDQDDLLDPDALADPDSSFYEIN 180
Query: 181 GVRVHHKVCTHEDSSDQSPDSAITNADQNQIGLPIVLLHGFGSSVFSWTHIMRPLARIAG 240
GVRVHHKVCTHEDSSDQSPDSAITNADQNQIGLPIVLLHGFGSSVFSWTHIMRPLARIAG
Sbjct: 181 GVRVHHKVCTHEDSSDQSPDSAITNADQNQIGLPIVLLHGFGSSVFSWTHIMRPLARIAG 240
Query: 241 AKVLAFDRPAFGLTSRTIWSGDDTKPINPYSMAFSVMATLAFIDQLGAKKAVLVGHSAGC 300
AKVLAFDRPAFGLTSRTIWSGDDTKPINPYSMAFSVMATLAFIDQLGAKKAVLVGHSAGC
Sbjct: 241 AKVLAFDRPAFGLTSRTIWSGDDTKPINPYSMAFSVMATLAFIDQLGAKKAVLVGHSAGC 300
Query: 301 LVAVEAYFEAPERVAALVLVAPAIFVPVFRRKGVKENGVGEQEWQNKKDSNDSNLPTNPL 360
LVAVEAYFEAPERVAALVLVAPAIFVPVFRRKGVKENGVGEQEWQNKKDSNDSNLPTNPL
Sbjct: 301 LVAVEAYFEAPERVAALVLVAPAIFVPVFRRKGVKENGVGEQEWQNKKDSNDSNLPTNPL 360
Query: 361 NRIWGKFLELCLWIAGFLMNMIRAIGGVVRSLYYKSVVAVLRSSVGVMLVRLIMDKFGIL 420
NRIWGKFLELCLWIAGFLMNMIRAIGGVVRSLYYKSVVAVLRSSVGVMLVRLIMDKFGIL
Sbjct: 361 NRIWGKFLELCLWIAGFLMNMIRAIGGVVRSLYYKSVVAVLRSSVGVMLVRLIMDKFGIL 420
Query: 421 AVRNAWYDPSKVTDHVIQGYTKPLRSRGWEMALLEYTXXXXXXXXXXXKVPVSERLSEIS 480
AVRNAWYDPSKVTDHVIQGYTKPLRSRGWEMALLEYT KVPVSERLSEIS
Sbjct: 421 AVRNAWYDPSKVTDHVIQGYTKPLRSRGWEMALLEYTISMIMDSISSSKVPVSERLSEIS 480
Query: 481 CPVLVVSGDTDRLVPRWNTERVARAIPGAGFEVIKNSGHLPQEERPEEFVSVVERFLRRA 540
CPVLVVSGDTDRLVPRWNTERVARAIPGAGFEVIKNSGHLPQEERPEEFVSVVERFLRRA
Sbjct: 481 CPVLVVSGDTDRLVPRWNTERVARAIPGAGFEVIKNSGHLPQEERPEEFVSVVERFLRRA 540
Query: 541 FGRPNNEQEQVLQAAV 556
FGRPNNEQEQVLQAAV
Sbjct: 541 FGRPNNEQEQVLQAAV 556
>Os11g0119100 Alpha/beta hydrolase fold-1 domain containing protein
Length = 296
Score = 543 bits (1398), Expect = e-154, Method: Compositional matrix adjust.
Identities = 270/299 (90%), Positives = 278/299 (92%), Gaps = 4/299 (1%)
Query: 257 TIWSGDDTKPINPYSMAFSVMATLAFIDQLGAKKAVLVGHSAGCLVAVEAYFEAPERVAA 316
TIWSGDDTKPINPYSM V+ATLAFIDQLGAKKAVLVGHSAGCLVAVEAYFEAPERVAA
Sbjct: 1 TIWSGDDTKPINPYSM---VIATLAFIDQLGAKKAVLVGHSAGCLVAVEAYFEAPERVAA 57
Query: 317 LVLVAPAIFVPVFRRKGVKENGVGEQEWQNKKDSNDSNLPTNPLNRIWGKFLELCLWIAG 376
LVLVAPAIFVPVFRRKGVKE GVGEQEWQNKKDSN SNLPTNPLNRIWGKFLELCLWIAG
Sbjct: 58 LVLVAPAIFVPVFRRKGVKEYGVGEQEWQNKKDSNGSNLPTNPLNRIWGKFLELCLWIAG 117
Query: 377 FLMNMIRAIGGVVRSLYYKSVVAVLRSSVGVMLVRLIMDKFGILAVRNAWYDPSKVTDHV 436
FLMNMIRAIG +VRSLY K+VVAVLRSSVGV LVRL+MDKFGILAVRNAWYDPSKVTDHV
Sbjct: 118 FLMNMIRAIGSIVRSLYCKAVVAVLRSSVGVRLVRLVMDKFGILAVRNAWYDPSKVTDHV 177
Query: 437 IQGYTKPLRSRGWEMALLEYTXXXXXXXXXXXKVPVSERLSEISCPVLVVSGDTDRLVPR 496
IQGYTKPLRSRGWEMALLEYT KVPVSERLSEISCPVLVVSGDTDRLVPR
Sbjct: 178 IQGYTKPLRSRGWEMALLEYTISMIMDSISSSKVPVSERLSEISCPVLVVSGDTDRLVPR 237
Query: 497 WNTERVARAIPGAGFEVIKNSGHLPQEERPEEFVSVVERFLRRAFGRPNNEQEQVLQAA 555
WNTERVARAIPGAGFEVIKNSGHLPQEERPEEFVSVVERFLR+AFGRP +EQE++ QAA
Sbjct: 238 WNTERVARAIPGAGFEVIKNSGHLPQEERPEEFVSVVERFLRKAFGRP-SEQEKLFQAA 295
>Os03g0399300 Similar to Inwardly rectifying potassium channel subunit
Length = 116
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/65 (96%), Positives = 64/65 (98%)
Query: 23 FYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSR 82
FYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNL LTAYIIGNMTNPVVHGTSR
Sbjct: 47 FYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSR 106
Query: 83 TRKFL 87
TRKF+
Sbjct: 107 TRKFV 111
>Os07g0175400 Cation channel, non-ligand gated family protein
Length = 891
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/63 (92%), Positives = 59/63 (93%)
Query: 24 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSRT 83
YVASMYW ITTLSTVGYGDMHAENTGEMV+TT YMLFNL LTAYIIGNMTN VVHGTSRT
Sbjct: 256 YVASMYWSITTLSTVGYGDMHAENTGEMVFTTTYMLFNLGLTAYIIGNMTNLVVHGTSRT 315
Query: 84 RKF 86
RKF
Sbjct: 316 RKF 318
>Os01g0648000 Similar to AKT1-like potassium channel
Length = 935
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 24 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSRT 83
YV S+YW ITTL+TVGYGD+HAENT EM++ YMLFNL LTAY+IGNMTN VVHGTSRT
Sbjct: 287 YVTSVYWSITTLTTVGYGDLHAENTREMIFNIFYMLFNLGLTAYLIGNMTNLVVHGTSRT 346
Query: 84 RKF 86
R +
Sbjct: 347 RNY 349
>Os02g0245800 Similar to Inward rectifying shaker K+ channel
Length = 539
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 24 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSRT 83
Y+ ++YW ITTL+T GYGD+HAEN EM++ YM+FNL LTAY+IGNMTN VVHGTSRT
Sbjct: 244 YITALYWSITTLTTTGYGDLHAENPTEMLFDIVYMMFNLGLTAYLIGNMTNLVVHGTSRT 303
Query: 84 RKF 86
RKF
Sbjct: 304 RKF 306
>Os01g0756700 Similar to Potassium channel (Fragment)
Length = 502
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 51/63 (80%)
Query: 24 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSRT 83
YV +MYW ITTL+T GYGD+HAEN EM++ YMLFNL LTAY+IGNMTN VVH TSRT
Sbjct: 251 YVTAMYWSITTLTTTGYGDLHAENAREMLFGICYMLFNLWLTAYLIGNMTNLVVHSTSRT 310
Query: 84 RKF 86
R F
Sbjct: 311 RDF 313
>Os01g0210700 Similar to Potassium channel (Fragment)
Length = 568
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 24 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSRT 83
YV ++YW ITTL+T GYGD+HAEN EM+++ YMLFNL LTAY+IGNMTN VV G+ RT
Sbjct: 193 YVTAIYWSITTLTTTGYGDLHAENQREMLFSICYMLFNLGLTAYLIGNMTNLVVQGSCRT 252
Query: 84 RKF 86
R F
Sbjct: 253 RNF 255
>Os01g0718700
Length = 593
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Query: 24 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSRT 83
Y ++YW ITTL+TVGYGD+HA NTGEM+++ A+MLFN+ LT+YIIGN+TN VVH T+ T
Sbjct: 220 YTCAVYWSITTLATVGYGDLHAANTGEMLFSIAFMLFNMGLTSYIIGNITNLVVHETTNT 279
Query: 84 RKFLIRSM 91
F +R M
Sbjct: 280 --FKMRDM 285
>Os06g0254200
Length = 591
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 24 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSRT 83
Y ++YW ITTL+TVGYGD+HA N GEM+++ A+MLFN+ LT+YIIGN+TN VV TS T
Sbjct: 219 YTCAVYWSITTLATVGYGDLHATNIGEMLFSIAFMLFNMGLTSYIIGNITNLVVRETSNT 278
Query: 84 RKFLIRSM 91
F +R M
Sbjct: 279 --FKMRDM 284
>Os04g0117500
Length = 368
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 50/62 (80%)
Query: 24 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSRT 83
Y ++YW ITTL+TVGYGD+HA N GEM+++ A+MLFN+ LT+YIIGN+TN VV TS T
Sbjct: 178 YTCAVYWSITTLATVGYGDLHATNIGEMLFSIAFMLFNMGLTSYIIGNITNLVVRETSNT 237
Query: 84 RK 85
K
Sbjct: 238 FK 239
>Os01g0647700 Epoxide hydrolase family protein
Length = 650
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 209 NQIGLPIVLLHGFGSSVFSWTHIMRPLARIAGAKVLAFDRPAFGLTS---RTIWSGDDTK 265
Q +VL+HGFG VFSW H+ L+R G VLAFDRP +GLTS R W +D
Sbjct: 364 EQGKFAVVLVHGFGGGVFSWRHVTNLLSRQVGCTVLAFDRPGWGLTSRPRRKDW--EDKN 421
Query: 266 PINPYSMAFSVMATLAFIDQLGAKKAVLVGHSAGCLVAVEA 306
NPY + V ++F +G + VLVGH G L+A++A
Sbjct: 422 LPNPYELGSQVDLLISFCSDMGLRSVVLVGHDDGGLLALKA 462
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,588,343
Number of extensions: 786786
Number of successful extensions: 3165
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 3169
Number of HSP's successfully gapped: 12
Length of query: 556
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 450
Effective length of database: 11,501,117
Effective search space: 5175502650
Effective search space used: 5175502650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)