Os12g0118400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Inwardly rectifying potassium channel subunit.
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Os12g0118400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Inwardly rectifying potassium channel subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.68 | 0.314 | 10.8 | -0.209 | 0.735 | -0.609 | -0.438 | -0.888 | -0.532 | 22.2 | 0.2777 | 6903 | -- | -- |
| 44.38 | 0.31 | 10.8 | -0.115 | 0.766 | -0.818 | -0.252 | -- | -0.546 | 22.1 | 0.4398 | 13553 | -- | -- |
| 44.76 | 0.312 | 10.8 | -0.207 | 0.753 | -0.574 | -- | -0.847 | -0.525 | 22.3 | 0.3755 | 13514 | -- | -- |
| 44.73 | 0.311 | 10.8 | -0.123 | 0.746 | -0.842 | -- | -- | -0.54 | 22.2 | 0.4393 | 13514 | -- | -- |
| 78.58 | 0.413 | 10.8 | -0.225 | -- | -0.617 | -- | -1.05 | -0.543 | -- | 0.2759 | 14191 | -- | -- |
| 60.19 | 0.364 | 10.7 | -0.417 | 0.75 | -- | -0.396 | -- | -0.439 | 22.3 | -- | -- | -- | -- |
| 60.82 | 0.365 | 10.7 | -0.402 | 0.752 | -- | -- | -- | -0.438 | 22.3 | -- | -- | -- | -- |
| 78.93 | 0.414 | 10.7 | -0.0933 | -- | -0.881 | -- | -- | -0.518 | -- | 0.44 | 14201 | -- | -- |
| 45.18 | 0.313 | 10.8 | -- | 0.752 | -0.851 | -- | -- | -0.546 | 22.2 | 0.4584 | 13566 | -- | -- |
| 95.21 | 0.456 | 10.7 | -0.39 | -- | -- | -- | -- | -0.436 | -- | -- | -- | -- | -- |
| 65.07 | 0.377 | 10.7 | -- | 0.75 | -- | -- | -- | -0.393 | 22.2 | -- | -- | -- | -- |
| 79.19 | 0.414 | 10.8 | -- | -- | -0.862 | -- | -- | -0.552 | -- | 0.4448 | 16981 | -- | -- |
| 99.22 | 0.465 | 10.7 | -- | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 2 | 43.37 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 3 | 43.37 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 17 |
| 7 | 43.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 55 | 43.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 56 | 43.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 63 | 43.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 66 | 43.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 9 |
| 109 | 43.80 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 18 | NA |
| 232 | 44.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 234 | 44.10 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 20 | NA |
| 235 | 44.10 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 20 | NA |
| 237 | 44.10 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 20 | NA |
| 273 | 44.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 282 | 44.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 286 | 44.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 345 | 44.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 347 | 44.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 364 | 44.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 460 | 44.56 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 487 | 44.60 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 547 | 44.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 549 | 44.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 555 | 44.80 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 556 | 44.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 638 | 45.08 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 698 | 45.30 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 703 | 45.34 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 704 | 45.34 | wind | 5.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 716 | 45.38 | wind | 5.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 747 | 45.55 | wind | 5.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 755 | 45.57 | wind | 5.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 766 | 45.66 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 770 | 45.68 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 772 | 45.69 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 846 | 45.99 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 852 | 46.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 853 | 46.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 863 | 46.05 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 892 | 46.12 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 894 | 46.13 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 895 | 46.13 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 919 | 46.18 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 921 | 46.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 926 | 46.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 22 |
| 946 | 46.20 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |