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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0756700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Potassium channel (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0207) R2 : 5.34e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00679 (0.0435) R2dN8 : 6.9e-05 R2N8 : 5.34e-05
σ : 0.389
deviance : 69.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.6 0.381 3.22 0.208 0.134 0.223 -0.0216 1.11 -0.0242 7.99 91 5857 -- --
67.34 0.382 3.22 0.135 0.134 0.255 0.0114 -- -0.0484 8.35 97.37 5601 -- --
65.6 0.377 3.22 0.207 0.134 0.224 -- 1.11 -0.0242 8.02 91 5857 -- --
67.32 0.382 3.22 0.133 0.134 0.256 -- -- -0.0506 8.27 92 5615 -- --
66.58 0.38 3.22 0.209 -- 0.224 -- 1.1 -0.023 -- 91 5832 -- --
68.21 0.387 3.21 0.115 0.134 -- -0.0339 -- 0.00422 7.84 -- -- -- --
68.21 0.387 3.21 0.115 0.133 -- -- -- 0.00431 7.91 -- -- -- --
68.29 0.385 3.22 0.138 -- 0.259 -- -- -0.0461 -- 91.26 5740 -- --
67.77 0.383 3.22 -- 0.135 0.241 -- -- -0.058 8.22 88.12 5602 -- --
69.18 0.389 3.21 0.116 -- -- -- -- 0.00609 -- -- -- -- --
68.56 0.387 3.21 -- 0.134 -- -- -- -0.00846 7.85 -- -- -- --
68.73 0.386 3.22 -- -- 0.238 -- -- -0.055 -- 88 5734 -- --
69.53 0.389 3.21 -- -- -- -- -- -0.00679 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.05 temperature 25.0 30 > th dose dependent rect. 6 1
3 61.28 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 61.40 radiation 10.0 30 < th dose independent rect. 6 1
6 62.13 atmosphere 1010.0 30 < th dose dependent rect. 6 1
9 62.89 wind 3.0 30 > th dose dependent rect. 6 1
11 63.33 humidity 90.0 30 < th dose dependent rect. 6 1
14 63.79 wind 3.0 30 > th dose independent rect. 6 1
18 63.91 radiation 1.0 10 > th dose dependent rect. 6 1
19 64.11 radiation 20.0 30 < th dose dependent rect. 6 1
21 64.20 temperature 25.0 30 > th dose independent rect. 6 1
25 64.38 temperature 25.0 10 > th dose dependent rect. 2 5
32 64.55 temperature 20.0 30 > th dose dependent rect. 22 1
34 64.56 temperature 20.0 30 > th dose independent rect. 22 1
36 64.56 atmosphere 1005.0 30 > th dose dependent rect. 22 1
37 64.57 wind 1.0 30 > th dose independent rect. 22 1
39 64.58 atmosphere 1005.0 30 > th dose independent rect. 22 1
40 64.58 atmosphere 995.0 30 > th dose dependent rect. 22 1
42 64.59 wind 5.0 30 < th dose independent rect. 22 1
45 64.59 temperature 10.0 30 > th dose independent rect. 22 1
47 64.59 temperature 30.0 30 < th dose independent rect. 22 1
48 64.59 humidity 50.0 30 > th dose independent rect. 22 1
51 64.59 humidity 90.0 30 < th dose independent rect. 22 1
52 64.59 atmosphere 995.0 30 > th dose independent rect. 22 1
53 64.59 atmosphere 1010.0 30 < th dose independent rect. 22 1
55 64.59 radiation 1.0 30 < th dose independent rect. 22 1
60 64.59 precipitation 0.1 30 < th dose independent rect. 22 1
61 64.59 temperature 10.0 30 > th dose independent rect. 23 23
62 64.59 wind 7.0 30 < th dose dependent rect. 22 1
64 64.59 radiation 1.0 30 < th dose dependent rect. 22 1
69 64.59 precipitation 0.1 30 < th dose dependent rect. 22 1
71 64.60 humidity 90.0 30 < th dose dependent rect. 22 1
76 64.62 humidity 50.0 30 > th dose dependent rect. 22 1
77 64.63 wind 9.0 1440 < th dose independent rect. 23 1
78 64.63 temperature 10.0 1440 > th dose independent rect. 23 1
81 64.63 temperature 30.0 1440 < th dose independent rect. 23 1
85 64.63 humidity 50.0 1440 > th dose independent rect. 23 1
95 64.63 atmosphere 995.0 1440 > th dose independent rect. 23 1
96 64.63 radiation 1.0 1440 < th dose independent rect. 23 1
116 64.63 temperature 10.0 1440 > th dose independent rect. 24 23
121 64.63 radiation 1.0 1440 < th dose dependent rect. 23 1
131 64.68 atmosphere 1015.0 30 < th dose dependent rect. 22 1
132 64.69 wind 1.0 30 > th dose dependent rect. 22 1
142 64.79 temperature 30.0 30 < th dose dependent rect. 22 1
147 64.82 humidity 90.0 10 < th dose independent rect. 6 1
156 64.90 wind 5.0 30 < th dose independent rect. 6 1
159 64.90 wind 9.0 1440 < th dose independent rect. 7 1
160 64.90 temperature 10.0 30 > th dose independent rect. 6 1
162 64.90 temperature 10.0 1440 > th dose independent rect. 7 1
166 64.90 temperature 30.0 30 < th dose independent rect. 6 1
167 64.90 temperature 30.0 1440 < th dose independent rect. 7 1
171 64.90 humidity 50.0 30 > th dose independent rect. 6 1
174 64.90 humidity 50.0 1440 > th dose independent rect. 7 1
179 64.90 atmosphere 995.0 30 > th dose independent rect. 6 1
181 64.90 atmosphere 995.0 1440 > th dose independent rect. 7 1
183 64.90 atmosphere 1015.0 1440 < th dose independent rect. 7 1
184 64.90 radiation 1.0 30 > th dose independent rect. 6 1
188 64.90 precipitation 0.1 30 < th dose independent rect. 6 1
189 64.90 temperature 10.0 30 > th dose independent rect. 7 23
190 64.90 temperature 10.0 1440 > th dose independent rect. 8 23
193 64.90 precipitation 0.1 30 < th dose dependent rect. 6 1
227 65.00 humidity 80.0 14400 < th dose dependent rect. 3 6
230 65.04 wind 9.0 30 < th dose independent rect. 23 23
238 65.14 humidity 50.0 30 > th dose dependent rect. 6 1
246 65.20 wind 9.0 30 < th dose dependent rect. 6 1
279 65.37 humidity 80.0 14400 < th dose dependent rect. 22 12
281 65.38 atmosphere 995.0 30 > th dose dependent rect. 6 1
289 65.48 wind 9.0 30 < th dose independent rect. 7 23
293 65.49 humidity 90.0 720 < th dose independent rect. 1 2
294 65.49 atmosphere 995.0 30 > th dose independent rect. 7 23
297 65.50 atmosphere 995.0 30 > th dose independent rect. 23 23
305 65.58 temperature 30.0 14400 < th dose independent rect. 14 1
306 65.58 humidity 70.0 14400 < th dose independent rect. 21 13
307 65.59 humidity 70.0 14400 < th dose independent rect. 7 3
308 65.59 humidity 70.0 14400 > th dose independent rect. 6 4
335 65.61 humidity 90.0 720 < th dose independent rect. 1 4
336 65.61 humidity 90.0 10 < th dose independent rect. 1 9
342 65.63 temperature 30.0 14400 > th dose independent rect. 15 1
347 65.64 temperature 30.0 14400 < th dose independent rect. 11 5
353 65.65 temperature 30.0 14400 > th dose independent rect. 11 5
357 65.66 humidity 90.0 10 < th dose independent rect. 2 6
358 65.66 humidity 90.0 10 < th dose independent rect. 4 6
359 65.67 temperature 30.0 14400 > th dose independent rect. 11 1
365 65.68 humidity 80.0 4320 > th dose independent rect. 7 6
382 65.69 temperature 30.0 14400 < th dose independent rect. 11 1
390 65.69 humidity 80.0 4320 < th dose independent rect. 7 6
470 65.72 wind 1.0 14400 < th dose dependent rect. 6 1
471 65.72 humidity 80.0 4320 > th dose dependent rect. 7 2
474 65.73 humidity 90.0 10 < th dose independent rect. 3 2
488 65.74 temperature 30.0 14400 < th dose independent sin 16 NA
557 65.75 temperature 30.0 14400 > th dose independent sin 15 NA
582 65.75 humidity 70.0 4320 > th dose dependent rect. 5 8
691 65.78 temperature 30.0 14400 > th dose dependent rect. 15 1
702 65.79 humidity 70.0 4320 > th dose independent rect. 4 11
723 65.79 temperature 30.0 14400 < th dose independent rect. 14 23
733 65.80 wind 5.0 14400 < th dose independent rect. 11 1
798 65.80 temperature 30.0 14400 > th dose independent rect. 14 23
805 65.81 temperature 30.0 14400 < th dose independent no NA NA
911 65.82 temperature 30.0 14400 > th dose independent no NA NA
915 65.82 humidity 90.0 720 < th dose independent rect. 24 7