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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0175400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cation channel, non-ligand gated family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0177) R2 : 0.000347
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0148 (0.0373) R2dN8 : 0.000449 R2N8 : 0.000347
σ : 0.333
deviance : 51.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.38 0.317 3.3 0.272 0.124 0.457 0.0658 -0.252 0.128 9.22 24.4 671 -- --
45.45 0.314 3.31 0.234 0.125 0.488 0.00646 -- 0.118 9.13 24.16 672 -- --
45.4 0.314 3.3 0.267 0.126 0.462 -- -0.209 0.125 9.12 24.3 668 -- --
45.45 0.314 3.31 0.233 0.125 0.489 -- -- 0.118 9.12 24.14 672 -- --
46.2 0.317 3.3 0.294 -- 0.504 -- -0.263 0.148 -- 25.4 679 -- --
48.85 0.328 3.32 0.101 0.181 -- -0.0106 -- 0.0252 9.33 -- -- -- --
48.85 0.327 3.32 0.101 0.181 -- -- -- 0.0252 9.33 -- -- -- --
46.27 0.317 3.31 0.248 -- 0.537 -- -- 0.134 -- 24.57 682 -- --
46.71 0.318 3.32 -- 0.135 0.386 -- -- 0.0757 9.11 24.1 652 -- --
50.77 0.333 3.33 0.0998 -- -- -- -- 0.0259 -- -- -- -- --
49.12 0.328 3.33 -- 0.181 -- -- -- 0.014 9.29 -- -- -- --
47.71 0.322 3.32 -- -- 0.433 -- -- 0.0886 -- 24.64 673 -- --
51.03 0.333 3.33 -- -- -- -- -- 0.0148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.59 wind 5.0 14400 < th dose independent rect. 9 8
2 43.62 wind 5.0 14400 > th dose independent rect. 9 8
43 44.22 wind 5.0 14400 > th dose independent rect. 15 1
50 44.26 humidity 90.0 14400 > th dose dependent rect. 18 10
55 44.27 temperature 10.0 30 > th dose dependent rect. 21 23
58 44.30 wind 3.0 14400 > th dose dependent rect. 9 7
64 44.32 wind 5.0 43200 < th dose dependent rect. 19 2
67 44.33 temperature 10.0 30 > th dose dependent rect. 3 23
71 44.35 wind 5.0 14400 < th dose independent sin 23 NA
80 44.39 wind 5.0 14400 > th dose independent sin 23 NA
95 44.41 wind 5.0 14400 < th dose independent rect. 15 1
130 44.49 wind 5.0 14400 < th dose independent rect. 10 17
133 44.50 precipitation 0.1 14400 > th dose independent rect. 23 9
139 44.51 wind 5.0 14400 < th dose independent rect. 10 15
143 44.52 precipitation 0.1 14400 < th dose independent rect. 23 9
147 44.52 wind 5.0 14400 > th dose independent rect. 10 17
149 44.52 humidity 90.0 14400 > th dose dependent sin 13 NA
151 44.52 precipitation 0.1 14400 < th dose dependent rect. 23 9
154 44.53 wind 5.0 14400 > th dose independent rect. 10 15
157 44.53 wind 1.0 43200 > th dose dependent rect. 19 1
162 44.54 wind 1.0 43200 < th dose dependent rect. 14 1
189 44.59 wind 5.0 14400 < th dose independent rect. 11 1
195 44.59 wind 5.0 14400 < th dose independent rect. 24 17
213 44.61 wind 5.0 14400 > th dose independent rect. 24 17
251 44.65 wind 3.0 43200 > th dose independent rect. 20 1
253 44.65 humidity 90.0 4320 > th dose dependent rect. 2 1
263 44.66 precipitation 0.1 14400 > th dose dependent rect. 23 9
310 44.72 wind 3.0 43200 < th dose independent rect. 20 1
311 44.72 precipitation 0.1 14400 > th dose independent rect. 1 7
322 44.73 humidity 90.0 14400 > th dose independent rect. 2 6
331 44.74 precipitation 0.1 14400 < th dose independent rect. 1 7
338 44.74 precipitation 0.1 14400 < th dose dependent rect. 1 7
359 44.76 wind 5.0 14400 < th dose dependent rect. 11 1
368 44.77 temperature 10.0 720 > th dose dependent rect. 21 12
394 44.81 wind 5.0 14400 > th dose dependent rect. 14 2
429 44.84 humidity 90.0 14400 > th dose dependent rect. 2 8
441 44.85 humidity 90.0 14400 > th dose dependent rect. 1 10
485 44.89 wind 5.0 43200 > th dose independent rect. 14 7
497 44.90 wind 5.0 14400 > th dose independent rect. 11 1
503 44.90 wind 5.0 43200 > th dose independent rect. 14 11
518 44.91 wind 5.0 43200 < th dose independent rect. 14 11
576 44.94 wind 7.0 14400 < th dose dependent rect. 10 5
585 44.95 wind 5.0 43200 < th dose independent rect. 14 7
595 44.95 wind 3.0 14400 > th dose dependent rect. 9 12
628 44.97 temperature 15.0 720 > th dose dependent rect. 8 1
633 44.97 wind 7.0 14400 < th dose dependent rect. 9 7
635 44.97 temperature 20.0 720 > th dose dependent rect. 21 12
637 44.97 temperature 10.0 720 > th dose dependent rect. 21 18
726 45.02 wind 1.0 14400 > th dose dependent rect. 11 1
728 45.02 wind 9.0 43200 < th dose dependent rect. 14 1
738 45.02 humidity 90.0 14400 > th dose dependent rect. 23 23
750 45.03 humidity 90.0 14400 > th dose dependent no NA NA
783 45.05 humidity 90.0 14400 > th dose independent rect. 18 11
795 45.05 wind 3.0 43200 > th dose dependent rect. 14 10
837 45.08 wind 1.0 43200 > th dose independent rect. 14 1
862 45.09 wind 3.0 43200 < th dose dependent rect. 9 1
865 45.09 humidity 80.0 43200 < th dose dependent rect. 3 8
871 45.09 temperature 30.0 720 < th dose dependent rect. 18 18
934 45.12 humidity 90.0 14400 > th dose dependent rect. 5 1
956 45.13 wind 3.0 14400 > th dose dependent sin 22 NA
965 45.13 temperature 30.0 30 < th dose dependent rect. 11 21
968 45.13 temperature 30.0 270 < th dose dependent rect. 22 22
1000 45.15 humidity 70.0 43200 < th dose dependent sin 7 NA