Os01g0210700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Potassium channel (Fragment).
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Os01g0210700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Potassium channel (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.13 | 0.5 | 7.93 | -1.1 | 2.14 | 0.727 | 0.87 | 3.96 | -0.0535 | 3.72 | 31.9 | 1143 | -- | -- |
| 117.36 | 0.505 | 7.96 | -1.43 | 2.09 | 1.14 | 0.843 | -- | 0.0261 | 3.74 | 32.3 | 1114 | -- | -- |
| 115.07 | 0.5 | 7.93 | -1.06 | 2.15 | 0.708 | -- | 4.42 | -0.0549 | 3.77 | 31.99 | 1108 | -- | -- |
| 116.06 | 0.502 | 8.01 | -1.76 | 2.16 | 1.2 | -- | -- | -0.0565 | 3.78 | 31.95 | 1113 | -- | -- |
| 364.54 | 0.889 | 7.91 | -1 | -- | 0.981 | -- | 4.65 | 0.0576 | -- | 32 | 1156 | -- | -- |
| 178.27 | 0.626 | 8.06 | -1.45 | 2.29 | -- | 1.22 | -- | -0.273 | 3.5 | -- | -- | -- | -- |
| 182.85 | 0.633 | 8.06 | -1.47 | 2.3 | -- | -- | -- | -0.281 | 3.53 | -- | -- | -- | -- |
| 366.59 | 0.892 | 8 | -1.76 | -- | 1.5 | -- | -- | 0.0599 | -- | 31.96 | 1158 | -- | -- |
| 195.36 | 0.651 | 7.97 | -- | 2.14 | 0.972 | -- | -- | 0.104 | 3.68 | 32.1 | 1106 | -- | -- |
| 477.43 | 1.02 | 8.06 | -1.37 | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
| 239.84 | 0.724 | 8.02 | -- | 2.27 | -- | -- | -- | -0.117 | 3.54 | -- | -- | -- | -- |
| 445.34 | 0.983 | 7.97 | -- | -- | 1.28 | -- | -- | 0.2 | -- | 32.27 | 1141 | -- | -- |
| 527.23 | 1.07 | 8.03 | -- | -- | -- | -- | -- | -0.0672 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 3 | 117.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 6 | 118.44 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 12 | 118.89 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 24 | 119.88 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 16 |
| 37 | 120.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 39 | 120.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 74 | 120.86 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 75 | 120.88 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 76 | 120.88 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 225 | 121.08 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 252 | 121.27 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 300 | 121.58 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 301 | 121.58 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 348 | 121.66 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 432 | 122.02 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 459 | 122.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 548 | 122.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 551 | 122.76 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 10 |
| 552 | 122.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 766 | 124.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 772 | 124.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 774 | 124.53 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 825 | 124.69 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 859 | 124.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 889 | 125.17 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 890 | 125.17 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 11 |