Os03g0399300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Inwardly rectifying potassium channel subunit.
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Os03g0399300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Inwardly rectifying potassium channel subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.73 | 0.592 | 8.97 | -1.08 | 1.76 | 1.38 | -0.902 | -2.99 | -0.106 | 0.0657 | 25.25 | 1221 | -- | -- |
| 161.68 | 0.592 | 8.87 | -0.315 | 1.77 | 1.09 | -1.06 | -- | 0.116 | 0.034 | 25.4 | 1196 | -- | -- |
| 161.62 | 0.592 | 8.97 | -1.15 | 1.69 | 1.5 | -- | -3.69 | -0.142 | 0.233 | 24.8 | 1113 | -- | -- |
| 166.25 | 0.601 | 8.88 | -0.29 | 1.77 | 1.09 | -- | -- | 0.0597 | 0.0797 | 24.76 | 1200 | -- | -- |
| 313.96 | 0.825 | 8.98 | -1.38 | -- | 2.43 | -- | -3.99 | -0.286 | -- | 24.09 | 1001 | -- | -- |
| 203.15 | 0.668 | 8.85 | 0.0117 | 1.97 | -- | -0.834 | -- | 0.188 | 0.161 | -- | -- | -- | -- |
| 206.16 | 0.672 | 8.85 | 0.0442 | 1.97 | -- | -- | -- | 0.192 | 0.181 | -- | -- | -- | -- |
| 326.39 | 0.841 | 8.87 | -0.458 | -- | 2 | -- | -- | -0.0409 | -- | 24.1 | 999 | -- | -- |
| 168.3 | 0.604 | 8.87 | -- | 1.78 | 1.02 | -- | -- | 0.107 | 0.0816 | 24.91 | 1200 | -- | -- |
| 451.06 | 0.992 | 8.81 | 0.108 | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
| 206.21 | 0.672 | 8.85 | -- | 1.97 | -- | -- | -- | 0.187 | 0.183 | -- | -- | -- | -- |
| 331.57 | 0.848 | 8.85 | -- | -- | 1.91 | -- | -- | 0.0213 | -- | 24.1 | 991 | -- | -- |
| 451.37 | 0.992 | 8.81 | -- | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.79 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 2 | 155.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 48 | 160.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 55 | 160.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 6 |
| 57 | 160.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 216 | 162.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 226 | 162.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 255 | 163.19 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 265 | 163.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 289 | 163.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 21 |
| 294 | 163.41 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 312 | 163.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 363 | 163.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 395 | 163.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 396 | 163.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 397 | 163.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 401 | 163.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 408 | 163.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 417 | 163.97 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 449 | 164.15 | temperature | 30 | 1440 | > th | dose independent | sin | 15 | NA |
| 470 | 164.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 472 | 164.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 473 | 164.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 480 | 164.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 490 | 164.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 528 | 164.52 | temperature | 30 | 1440 | < th | dose independent | sin | 15 | NA |
| 618 | 165.03 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 700 | 165.37 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 14 |
| 701 | 165.39 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 791 | 165.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 813 | 166.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 834 | 166.17 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 932 | 166.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 934 | 166.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 935 | 166.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 940 | 166.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 943 | 166.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 950 | 166.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 956 | 166.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 961 | 166.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 965 | 166.31 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 981 | 166.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 18 |