BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0399300 Os03g0399300|Os03g0399300
(116 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0399300 Similar to Inwardly rectifying potassium chann... 205 5e-54
Os12g0118400 Similar to Inwardly rectifying potassium chann... 135 8e-33
Os07g0175400 Cation channel, non-ligand gated family protein 126 3e-30
Os01g0648000 Similar to AKT1-like potassium channel 106 4e-24
Os02g0245800 Similar to Inward rectifying shaker K+ channel 105 7e-24
Os01g0756700 Similar to Potassium channel (Fragment) 100 2e-22
Os01g0210700 Similar to Potassium channel (Fragment) 100 3e-22
Os01g0718700 94 2e-20
Os06g0254200 91 3e-19
Os04g0117500 89 5e-19
>Os03g0399300 Similar to Inwardly rectifying potassium channel subunit
Length = 116
Score = 205 bits (522), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 101/116 (87%)
Query: 1 MRSSSSPPARWGEAEVXXXXXXXXXXXXXXXRRRECVEKEETRKPAFYVASMYWFITTLS 60
MRSSSSPPARWGEAEV RRRECVEKEETRKPAFYVASMYWFITTLS
Sbjct: 1 MRSSSSPPARWGEAEVGKGKGKSGGSGKDGDRRRECVEKEETRKPAFYVASMYWFITTLS 60
Query: 61 TVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRTRKFVSSHFL 116
TVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRTRKFVSSHFL
Sbjct: 61 TVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRTRKFVSSHFL 116
>Os12g0118400 Similar to Inwardly rectifying potassium channel subunit
Length = 556
Score = 135 bits (339), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 63/65 (96%), Positives = 64/65 (98%)
Query: 47 FYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSR 106
FYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNL LTAYIIGNMTNPVVHGTSR
Sbjct: 23 FYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLSLTAYIIGNMTNPVVHGTSR 82
Query: 107 TRKFV 111
TRKF+
Sbjct: 83 TRKFL 87
>Os07g0175400 Cation channel, non-ligand gated family protein
Length = 891
Score = 126 bits (317), Expect = 3e-30, Method: Composition-based stats.
Identities = 59/63 (93%), Positives = 60/63 (95%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
YVASMYW ITTLSTVGYGDMHAENTGEMV+TT YMLFNLGLTAYIIGNMTN VVHGTSRT
Sbjct: 256 YVASMYWSITTLSTVGYGDMHAENTGEMVFTTTYMLFNLGLTAYIIGNMTNLVVHGTSRT 315
Query: 108 RKF 110
RKF
Sbjct: 316 RKF 318
>Os01g0648000 Similar to AKT1-like potassium channel
Length = 935
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
YV S+YW ITTL+TVGYGD+HAENT EM++ YMLFNLGLTAY+IGNMTN VVHGTSRT
Sbjct: 287 YVTSVYWSITTLTTVGYGDLHAENTREMIFNIFYMLFNLGLTAYLIGNMTNLVVHGTSRT 346
Query: 108 RKF 110
R +
Sbjct: 347 RNY 349
>Os02g0245800 Similar to Inward rectifying shaker K+ channel
Length = 539
Score = 105 bits (262), Expect = 7e-24, Method: Composition-based stats.
Identities = 46/66 (69%), Positives = 55/66 (83%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
Y+ ++YW ITTL+T GYGD+HAEN EM++ YM+FNLGLTAY+IGNMTN VVHGTSRT
Sbjct: 244 YITALYWSITTLTTTGYGDLHAENPTEMLFDIVYMMFNLGLTAYLIGNMTNLVVHGTSRT 303
Query: 108 RKFVSS 113
RKF S
Sbjct: 304 RKFRDS 309
>Os01g0756700 Similar to Potassium channel (Fragment)
Length = 502
Score = 100 bits (249), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 51/63 (80%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
YV +MYW ITTL+T GYGD+HAEN EM++ YMLFNL LTAY+IGNMTN VVH TSRT
Sbjct: 251 YVTAMYWSITTLTTTGYGDLHAENAREMLFGICYMLFNLWLTAYLIGNMTNLVVHSTSRT 310
Query: 108 RKF 110
R F
Sbjct: 311 RDF 313
>Os01g0210700 Similar to Potassium channel (Fragment)
Length = 568
Score = 100 bits (248), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
YV ++YW ITTL+T GYGD+HAEN EM+++ YMLFNLGLTAY+IGNMTN VV G+ RT
Sbjct: 193 YVTAIYWSITTLTTTGYGDLHAENQREMLFSICYMLFNLGLTAYLIGNMTNLVVQGSCRT 252
Query: 108 RKF 110
R F
Sbjct: 253 RNF 255
>Os01g0718700
Length = 593
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 53/62 (85%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
Y ++YW ITTL+TVGYGD+HA NTGEM+++ A+MLFN+GLT+YIIGN+TN VVH T+ T
Sbjct: 220 YTCAVYWSITTLATVGYGDLHAANTGEMLFSIAFMLFNMGLTSYIIGNITNLVVHETTNT 279
Query: 108 RK 109
K
Sbjct: 280 FK 281
>Os06g0254200
Length = 591
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 51/62 (82%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
Y ++YW ITTL+TVGYGD+HA N GEM+++ A+MLFN+GLT+YIIGN+TN VV TS T
Sbjct: 219 YTCAVYWSITTLATVGYGDLHATNIGEMLFSIAFMLFNMGLTSYIIGNITNLVVRETSNT 278
Query: 108 RK 109
K
Sbjct: 279 FK 280
>Os04g0117500
Length = 368
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 41 ETRKPAF-YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNP 99
E R F Y ++YW ITTL+TVGYGD+HA N GEM+++ A+MLFN+GLT+YIIGN+TN
Sbjct: 170 EDRSVWFCYTCAVYWSITTLATVGYGDLHATNIGEMLFSIAFMLFNMGLTSYIIGNITNL 229
Query: 100 VVHGTSRTRK 109
VV TS T K
Sbjct: 230 VVRETSNTFK 239
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,354,652
Number of extensions: 101554
Number of successful extensions: 146
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 10
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)