BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0399300 Os03g0399300|Os03g0399300
(116 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26650.1 | chr2:11331965-11336444 REVERSE LENGTH=858 107 1e-24
AT4G22200.1 | chr4:11746666-11750091 REVERSE LENGTH=803 104 7e-24
AT5G46240.1 | chr5:18743652-18746561 REVERSE LENGTH=678 97 2e-21
AT2G25600.1 | chr2:10894603-10898369 FORWARD LENGTH=889 94 1e-20
AT4G32500.1 | chr4:15681122-15685214 FORWARD LENGTH=881 90 2e-19
AT4G32650.1 | chr4:15751482-15754797 REVERSE LENGTH=663 85 6e-18
AT4G18290.1 | chr4:10115418-10118477 FORWARD LENGTH=698 84 2e-17
AT3G02850.1 | chr3:619701-623473 REVERSE LENGTH=829 69 3e-13
AT5G37500.1 | chr5:14889758-14894883 REVERSE LENGTH=821 64 1e-11
>AT2G26650.1 | chr2:11331965-11336444 REVERSE LENGTH=858
Length = 857
Score = 107 bits (268), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/63 (76%), Positives = 53/63 (84%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
YV SMYW ITTL+TVGYGD+H NT EM++ YMLFNLGLTAY+IGNMTN VVHGTSRT
Sbjct: 240 YVTSMYWSITTLTTVGYGDLHPVNTKEMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRT 299
Query: 108 RKF 110
R F
Sbjct: 300 RNF 302
>AT4G22200.1 | chr4:11746666-11750091 REVERSE LENGTH=803
Length = 802
Score = 104 bits (260), Expect = 7e-24, Method: Composition-based stats.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 41 ETRKPAFYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPV 100
ET Y+A++YW ITT++TVGYGD+HA NT EMV+ T YMLFNLGLTAY+IGNMTN V
Sbjct: 257 ETSLSIRYIAAIYWSITTMTTVGYGDLHASNTIEMVFITVYMLFNLGLTAYLIGNMTNLV 316
Query: 101 VHGTSRTRKFVSS 113
V GT RT +F +S
Sbjct: 317 VEGTRRTMEFRNS 329
>AT5G46240.1 | chr5:18743652-18746561 REVERSE LENGTH=678
Length = 677
Score = 97.1 bits (240), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/66 (66%), Positives = 52/66 (78%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
YV ++YW ITTL+T GYGD HAEN EM++ +M+FNLGLTAY+IGNMTN VVH TSRT
Sbjct: 247 YVTALYWSITTLTTTGYGDFHAENPREMLFDIFFMMFNLGLTAYLIGNMTNLVVHWTSRT 306
Query: 108 RKFVSS 113
R F S
Sbjct: 307 RTFRDS 312
>AT2G25600.1 | chr2:10894603-10898369 FORWARD LENGTH=889
Length = 888
Score = 94.0 bits (232), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/63 (66%), Positives = 48/63 (76%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
Y +MYW ITT ST GYGD+H N+ EM + YM+FNLGL+AYIIGNMTN VVH T RT
Sbjct: 266 YNTAMYWSITTFSTTGYGDIHGVNSREMTFILFYMVFNLGLSAYIIGNMTNLVVHVTGRT 325
Query: 108 RKF 110
RKF
Sbjct: 326 RKF 328
>AT4G32500.1 | chr4:15681122-15685214 FORWARD LENGTH=881
Length = 880
Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 46/63 (73%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
YV +MYW ITT ST GYGD+H N E + YM+FNLGL AYIIGNMTN VVH TSRT
Sbjct: 264 YVTAMYWSITTFSTTGYGDIHGNNAEERAFILFYMIFNLGLLAYIIGNMTNLVVHVTSRT 323
Query: 108 RKF 110
R F
Sbjct: 324 RNF 326
>AT4G32650.1 | chr4:15751482-15754797 REVERSE LENGTH=663
Length = 662
Score = 85.1 bits (209), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/60 (65%), Positives = 45/60 (75%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
Y SMYW I TL+TVGYGD+HA N+ E + YMLFN+GLT+YIIG MTN VVHG RT
Sbjct: 276 YTYSMYWSIVTLTTVGYGDLHAVNSREKTFNMFYMLFNIGLTSYIIGIMTNLVVHGALRT 335
>AT4G18290.1 | chr4:10115418-10118477 FORWARD LENGTH=698
Length = 697
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/71 (61%), Positives = 55/71 (77%)
Query: 40 EETRKPAFYVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNP 99
+ET + YV ++YW ITTL+T GYGD+HAEN EM++ +MLFNLG T+Y+IGNMTN
Sbjct: 239 KETSVWSRYVTALYWSITTLTTTGYGDLHAENPREMLFFVFFMLFNLGFTSYLIGNMTNL 298
Query: 100 VVHGTSRTRKF 110
VVH TSRTR F
Sbjct: 299 VVHWTSRTRNF 309
>AT3G02850.1 | chr3:619701-623473 REVERSE LENGTH=829
Length = 828
Score = 69.3 bits (168), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
Y SMY+ + T++TVGYGD+HA N EM++ Y+ F++ L AY+IGNMT +V G S+T
Sbjct: 275 YTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMILGAYLIGNMTALIVKG-SKT 333
Query: 108 RKF 110
+F
Sbjct: 334 ERF 336
>AT5G37500.1 | chr5:14889758-14894883 REVERSE LENGTH=821
Length = 820
Score = 63.9 bits (154), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 43/61 (70%)
Query: 48 YVASMYWFITTLSTVGYGDMHAENTGEMVYTTAYMLFNLGLTAYIIGNMTNPVVHGTSRT 107
Y ++Y+ I T++TVGYGD+HA N EM++ Y+ F++ L AY+IGN+T +V G++
Sbjct: 258 YTTALYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNITALIVKGSNTE 317
Query: 108 R 108
R
Sbjct: 318 R 318
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,167,421
Number of extensions: 67217
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 9
Length of query: 116
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 31
Effective length of database: 8,776,209
Effective search space: 272062479
Effective search space used: 272062479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)