BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0600700 Os11g0600700|AK071098
(278 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0600700 Similar to RING domain protein 402 e-112
Os08g0436200 RINGv domain containing protein 250 8e-67
Os02g0577100 RINGv domain containing protein 246 2e-65
Os01g0121200 RINGv domain containing protein 124 8e-29
Os01g0894600 RINGv domain containing protein 122 3e-28
Os05g0552400 RINGv domain containing protein 111 5e-25
Os01g0303600 RINGv domain containing protein 111 6e-25
Os05g0355300 Zinc finger, RING-type domain containing protein 105 3e-23
Os09g0413000 Hypothetical protein 86 2e-17
>Os11g0600700 Similar to RING domain protein
Length = 278
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/262 (76%), Positives = 201/262 (76%)
Query: 1 MGDHVVVNVEGLGNDGGAVEKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLIQAAECR 60
MGDHVVVNVEGLGNDGGAVEKP PLIQAAECR
Sbjct: 1 MGDHVVVNVEGLGNDGGAVEKPSEAVNSSVVAAASLSTTVDTVEEGGGEEEPLIQAAECR 60
Query: 61 ICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPRVEP 120
ICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPRVEP
Sbjct: 61 ICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPRVEP 120
Query: 121 DDTIIDIGGDWARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSXXXXXXXXXXXX 180
DDTIIDIGGDWARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRS
Sbjct: 121 DDTIIDIGGDWARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSAALILMALLLLR 180
Query: 181 XXXSISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILHXXXXXXXXXXXXXXXXX 240
SISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILH
Sbjct: 181 HALSISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILHRRRQRQEAAAIAAAEVA 240
Query: 241 FILQSAQGHALQFTIAPDSPAT 262
FILQSAQGHALQFTIAPDSPAT
Sbjct: 241 FILQSAQGHALQFTIAPDSPAT 262
>Os08g0436200 RINGv domain containing protein
Length = 276
Score = 250 bits (639), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 126/219 (57%), Positives = 144/219 (65%), Gaps = 11/219 (5%)
Query: 52 PLIQAAECRICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHG 111
PLIQ ECRICQEED+I NLE PCAC+GSLKYAHRACVQRWC+EKGD+TCEICHE YKHG
Sbjct: 54 PLIQTVECRICQEEDNISNLESPCACTGSLKYAHRACVQRWCDEKGDLTCEICHEPYKHG 113
Query: 112 YTAPPRVEPDDTIIDIGGDWA--------RDPRIIAVAAAQRRLLETEYDEYAGTDASGA 163
YTA PR PD+T IDI G W DPRIIA+ AQ ++E +YD+Y+ T+AS A
Sbjct: 114 YTALPRAHPDETTIDISGGWTITGTAFDLHDPRIIAM--AQNHIMEADYDDYSVTNASSA 171
Query: 164 AFCRSXXXXXXXXXXXXXXXSISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILH 223
AFCRS ++D E +DDAS+MF LFLLR GFLLP YIMAW +IL
Sbjct: 172 AFCRSAALILMALLVLRHVLVLTD-EDEDDASSMFLLFLLRVTGFLLPFYIMAWAINILQ 230
Query: 224 XXXXXXXXXXXXXXXXXFILQSAQGHALQFTIAPDSPAT 262
FILQS Q + FTIAPDSPAT
Sbjct: 231 GRRRRQVAAALAATEVAFILQSGQRRGMNFTIAPDSPAT 269
>Os02g0577100 RINGv domain containing protein
Length = 250
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/271 (49%), Positives = 155/271 (57%), Gaps = 37/271 (13%)
Query: 1 MGDHVVVNVEGLGNDGGAVEKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLIQAAECR 60
MGDHV V+V GL GA E+ LI ECR
Sbjct: 1 MGDHVAVDVGGLMASRGAGEEETGA---------------------------LIGMVECR 33
Query: 61 ICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPRVEP 120
ICQEED KNLE PCACSGSLKYAHR CVQRWCNEKGDI CEICH YK GYTAPP+V
Sbjct: 34 ICQEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGYTAPPQVHH 93
Query: 121 DDTIIDI-GGDWA--------RDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSXXX 171
D+T I+I GDW+ DPRI+A+AAAQ RLLE EYDEY T+ + AAFCRS
Sbjct: 94 DETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYTATNNNAAAFCRSIFL 153
Query: 172 XXXXXXXXXXXXSISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILHXXXXXXXX 231
+I+ ++ +DDAS +FSLFLLRAAGFLLPCYIMAW SI+
Sbjct: 154 ILMALLLLRHTLTITSSDDEDDASAIFSLFLLRAAGFLLPCYIMAWAISIMQRQRQRQEE 213
Query: 232 XXXXXXXXXFILQSAQGHALQFTIAPDSPAT 262
IL G +QF +AP+SP T
Sbjct: 214 AMLLPTEVAIILHR-NGRTMQFAVAPESPTT 243
>Os01g0121200 RINGv domain containing protein
Length = 269
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Query: 55 QAAECRICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTA 114
+ ECRICQEED ++E PCAC GSLKYAHR C+QRWCNEKGD CEIC +Q+K GYTA
Sbjct: 51 KMVECRICQEEDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTA 110
Query: 115 PPRVEPDDTI-IDIGGDW------ARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCR 167
P ++ +I ++ G+W D +II + ++R ++ D S CR
Sbjct: 111 PQQLFHYGSIPMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLCCR 170
Query: 168 SXXXXXXXXXXXXXXXSISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILH 223
+ + + + +FSL +LR AG L P +M + H
Sbjct: 171 TVAIIFMSLLVLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRALATFH 226
>Os01g0894600 RINGv domain containing protein
Length = 219
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 58 ECRICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPP- 116
ECRICQEE ++ PCAC+G+LK+AHR C+QRWC++KG+ITCEIC++ Y Y PP
Sbjct: 41 ECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPT 100
Query: 117 RVEPDDTIIDIGGDWA-----RDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSXXX 171
+ + +D+ W D +A+A A+++LL+ E+D+ +++SGA CR+
Sbjct: 101 KCCSAEMDMDLRQSWVGRIDPHDSHFLAIAIAEQQLLQAEFDDCVSSNSSGATCCRTVVL 160
Query: 172 XXXXXXXXXXXXSIS-DNEGDDDASTMFSLFLLRAAGFLLPCYIMA 216
D DA+ +FS L+ AGF LPCY++A
Sbjct: 161 ILMLLLLVRHVVVFVRDVSMLQDATVLFSA-TLQFAGFFLPCYVIA 205
>Os05g0552400 RINGv domain containing protein
Length = 252
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 58 ECRICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPR 117
ECRICQEED +E PC+C GSLKYAHR C+QRWC+EKGD CEIC +QY YTAP +
Sbjct: 54 ECRICQEEDDQTYMETPCSCRGSLKYAHRKCIQRWCDEKGDTICEICLQQYTPNYTAPAK 113
Query: 118 VEPDDTIIDIGGDWARDPRIIAVAAAQRR----LLETEYDEYAGTDASGAAFCRSXXXXX 173
+ + R P I Q T YD + G +CR
Sbjct: 114 LFQHGR----NSIFFRTPGYIQAQVMQNTDRSAAASTSYDPEL-PNPKGVIYCR--IVAL 166
Query: 174 XXXXXXXXXXSISDNEGDDDAST--MFSLFLLRAAGFLLPCYIMAWIFS-ILH 223
+IS GD DA T M +L +LR AG ++P YI+ + +LH
Sbjct: 167 TLMVLLLLHDAISVFLGDHDAYTVAMITLLMLRTAGIVIPVYIILLSLTELLH 219
>Os01g0303600 RINGv domain containing protein
Length = 220
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Query: 58 ECRIC--QEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAP 115
+CRIC +EE+ +E PC CSGSLKYAHR CVQRWC+EKG CEIC + ++ GYTAP
Sbjct: 14 QCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAP 73
Query: 116 P-RVEPDDTIIDIGGDWARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSXXXXXX 174
P + +P + I + PR + E +Y E AG A +CRS
Sbjct: 74 PKKAQPAHVAVTI-RESLEVPRPSYEPEDTPLIGEQDYAECAGAAGRSATWCRSVAVTFT 132
Query: 175 XXXXXXXXXS-ISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILH 223
+ ++ A ++ +++LLRA+G LLP Y++ + S +
Sbjct: 133 AVLLLRHLVAVVTVGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTVQ 182
>Os05g0355300 Zinc finger, RING-type domain containing protein
Length = 213
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 14/172 (8%)
Query: 61 ICQEEDS--IKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPP-R 117
IC EE+ +E PC CSGSLKYAHR CVQRWC+EKG CEIC + ++ YT PP +
Sbjct: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
Query: 118 VEPDDTIIDIGGDWARDPRIIAVAAAQRRLLETEYDEYAGTDASG-----AAFCRSXXXX 172
V+ +T + + + RD ++ L + + ++YAG++A +++CRS
Sbjct: 68 VQVVETAVTVRAFFCRDEEMLP-----EELSQEDQEQYAGSEAQTGNGDCSSWCRSLTIT 122
Query: 173 XXXXXXXXXXXSISDNEGDDD-ASTMFSLFLLRAAGFLLPCYIMAWIFSILH 223
++ E D A ++ ++FLLRAAG LLP Y + + ++
Sbjct: 123 FTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFYAIMRMVRMIQ 174
>Os09g0413000 Hypothetical protein
Length = 79
Score = 86.3 bits (212), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 44/72 (61%)
Query: 191 DDDASTMFSLFLLRAAGFLLPCYIMAWIFSILHXXXXXXXXXXXXXXXXXFILQSAQGHA 250
DDD S MFSLFLLRAAGFLLP YIMAW SIL FILQS QG
Sbjct: 1 DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSILQRRRQRQEAAALAATEVAFILQSGQGTG 60
Query: 251 LQFTIAPDSPAT 262
+ FTIAPDSP T
Sbjct: 61 VHFTIAPDSPTT 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,977,344
Number of extensions: 281461
Number of successful extensions: 547
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 9
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)