Os05g0355300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os05g0355300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.89 | 0.635 | 7.55 | -2.1 | 1.41 | 1.3 | 0.299 | 0.652 | -0.0443 | 17 | 18.56 | 4 | -- | -- |
| 185.1 | 0.634 | 7.55 | -2.12 | 1.41 | 1.32 | 0.0791 | -- | -0.0467 | 17 | 18.63 | 4 | -- | -- |
| 183.1 | 0.63 | 7.55 | -2.1 | 1.41 | 1.31 | -- | 0.607 | -0.0432 | 17 | 18.62 | 4 | -- | -- |
| 185.11 | 0.634 | 7.55 | -2.12 | 1.42 | 1.33 | -- | -- | -0.0459 | 16.9 | 18.63 | 4 | -- | -- |
| 273.32 | 0.774 | 7.53 | -2.18 | -- | 1 | -- | 0.773 | -0.0441 | -- | 6.864 | 4 | -- | -- |
| 213.42 | 0.685 | 7.58 | -2.12 | 1.71 | -- | 1 | -- | -0.0504 | 20.4 | -- | -- | -- | -- |
| 216.57 | 0.689 | 7.58 | -2.15 | 1.71 | -- | -- | -- | -0.0495 | 20.3 | -- | -- | -- | -- |
| 275.86 | 0.774 | 7.53 | -2.19 | -- | 1.02 | -- | -- | -0.0452 | -- | 6.866 | 3 | -- | -- |
| 302.75 | 0.81 | 7.5 | -- | 1.48 | 1.39 | -- | -- | 0.194 | 16.9 | 22.4 | 6 | -- | -- |
| 378.79 | 0.909 | 7.53 | -2.16 | -- | -- | -- | -- | -0.0676 | -- | -- | -- | -- | -- |
| 338.73 | 0.861 | 7.52 | -- | 1.72 | -- | -- | -- | 0.19 | 20.3 | -- | -- | -- | -- |
| 401.18 | 0.933 | 7.47 | -- | -- | 1 | -- | -- | 0.204 | -- | 6.395 | 2 | -- | -- |
| 502.21 | 1.05 | 7.48 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.98 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 2 | 183.05 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 7 | 184.17 | radiation | 10.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 9 | 184.30 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 10 | 184.30 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 12 | 184.41 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 18 | 184.74 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 29 | 185.48 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 41 | 186.00 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 42 | 186.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 45 | 186.21 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 47 | 186.39 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 61 | 186.79 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 14 | 13 |
| 65 | 186.88 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 95 | 187.50 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 7 |
| 135 | 187.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 138 | 188.01 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 156 | 188.13 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 158 | 188.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 160 | 188.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 202 | 188.49 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 212 | 188.58 | radiation | 10.0 | 90 | < th | dose independent | rect. | 7 | 12 |
| 229 | 188.80 | radiation | 1.0 | 30 | < th | dose independent | sin | 0 | NA |
| 246 | 188.90 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 247 | 188.92 | radiation | 1.0 | 30 | > th | dose independent | sin | 0 | NA |
| 278 | 189.11 | wind | 7.0 | 4320 | > th | dose independent | rect. | 14 | 12 |
| 290 | 189.17 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 18 |
| 294 | 189.20 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 13 |
| 304 | 189.29 | wind | 7.0 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 359 | 189.68 | wind | 7.0 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 404 | 189.96 | wind | 7.0 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 456 | 190.22 | humidity | 90.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 457 | 190.22 | humidity | 90.0 | 4320 | > th | dose dependent | sin | 3 | NA |
| 458 | 190.22 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 7 |
| 460 | 190.24 | radiation | 20.0 | 10 | < th | dose independent | rect. | 9 | 11 |
| 483 | 190.35 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 504 | 190.43 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 545 | 190.58 | wind | 5.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 546 | 190.58 | radiation | 10.0 | 30 | < th | dose independent | rect. | 7 | 22 |
| 552 | 190.60 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 565 | 190.65 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 14 |
| 634 | 190.93 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 639 | 190.93 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 5 | 7 |
| 660 | 191.00 | wind | 7.0 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 687 | 191.09 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 6 |
| 702 | 191.13 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 705 | 191.14 | wind | 5.0 | 4320 | > th | dose dependent | sin | 15 | NA |
| 715 | 191.18 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 735 | 191.26 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 755 | 191.30 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 804 | 191.40 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 807 | 191.41 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 835 | 191.48 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 838 | 191.49 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 850 | 191.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 852 | 191.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 858 | 191.53 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 15 |
| 874 | 191.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 876 | 191.56 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 893 | 191.59 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 904 | 191.61 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 20 |
| 921 | 191.65 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 941 | 191.68 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 942 | 191.68 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 953 | 191.70 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 973 | 191.75 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 23 | 15 |
| 983 | 191.77 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 995 | 191.79 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |