BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0355300 Os05g0355300|Os05g0355300
(213 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0355300 Zinc finger, RING-type domain containing protein 402 e-112
Os01g0303600 RINGv domain containing protein 213 6e-56
Os11g0600700 Similar to RING domain protein 111 4e-25
Os05g0552400 RINGv domain containing protein 108 2e-24
Os02g0577100 RINGv domain containing protein 103 1e-22
Os01g0121200 RINGv domain containing protein 102 1e-22
Os08g0436200 RINGv domain containing protein 97 8e-21
Os01g0894600 RINGv domain containing protein 84 6e-17
>Os05g0355300 Zinc finger, RING-type domain containing protein
Length = 213
Score = 402 bits (1032), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/213 (91%), Positives = 195/213 (91%)
Query: 1 MEKRGRGICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESD 60
MEKRGRGICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESD
Sbjct: 1 MEKRGRGICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESD 60
Query: 61 YTIPPKKVQVVETAVTVRAFFCRDEEMLPEELSQEDQEQYAGSEAQTGNGDCSSWCRSLT 120
YTIPPKKVQVVETAVTVRAFFCRDEEMLPEELSQEDQEQYAGSEAQTGNGDCSSWCRSLT
Sbjct: 61 YTIPPKKVQVVETAVTVRAFFCRDEEMLPEELSQEDQEQYAGSEAQTGNGDCSSWCRSLT 120
Query: 121 ITFTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFYAIMRMVRMIXXXXXXX 180
ITFTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFYAIMRMVRMI
Sbjct: 121 ITFTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFYAIMRMVRMIQQGQRQF 180
Query: 181 XXXXXXXXXXXNASNLHSMSGQEQHQQLVINVH 213
NASNLHSMSGQEQHQQLVINVH
Sbjct: 181 RLQLLQDQRRRNASNLHSMSGQEQHQQLVINVH 213
>Os01g0303600 RINGv domain containing protein
Length = 220
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 135/206 (65%), Gaps = 4/206 (1%)
Query: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
ICHEEE+E C A+ESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFE YT PPKK
Sbjct: 17 ICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAPPKK 76
Query: 68 VQVVETAVTVR-AFFCRDEEMLPEELSQEDQEQYAGSEAQTGNGDCSSWCRSLTITFTIM 126
Q AVT+R + PE+ ++ YA E G ++WCRS+ +TFT +
Sbjct: 77 AQPAHVAVTIRESLEVPRPSYEPEDTPLIGEQDYA--ECAGAAGRSATWCRSVAVTFTAV 134
Query: 127 LLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFYAIMRMVRMIXXXXXXXXXXXXX 186
LL+ HL+AVVT+ AA AFSL+TI+LLRA+GILLPFY +MR++ +
Sbjct: 135 LLLRHLVAVVTVGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTV-QKGQRQYQLQLL 193
Query: 187 XXXXXNASNLHSMSGQEQHQQLVINV 212
NA+ +H + GQE+ Q I V
Sbjct: 194 QEQRRNAARMHRLHGQEEQNQHAILV 219
>Os11g0600700 Similar to RING domain protein
Length = 278
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 14/162 (8%)
Query: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
IC EE+ +E PC CSGSLKYAHR CVQRWC+EKG CEIC + ++ YT PP +
Sbjct: 61 ICQEEDS--IKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPP-R 117
Query: 68 VQVVETAVTVRAFFCRDEEMLP-----EELSQEDQEQYAGSEAQTGNGDCSSWCRSLTIT 122
V+ +T + + + RD ++ L + + ++YAG++A +++CRS +
Sbjct: 118 VEPDDTIIDIGGDWARDPRIIAVAAAQRRLLETEYDEYAGTDASG-----AAFCRSAALI 172
Query: 123 FTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFY 164
+LL+ H +++ E D A ++ ++FLLRAAG LLP Y
Sbjct: 173 LMALLLLRHALSISDNEGDDD-ASTMFSLFLLRAAGFLLPCY 213
>Os05g0552400 RINGv domain containing protein
Length = 252
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 15/165 (9%)
Query: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
IC EE+D+ +E+PC C GSLKYAHR C+QRWCDEKG T+CEICLQ + +YT P K
Sbjct: 57 ICQEEDDQ--TYMETPCSCRGSLKYAHRKCIQRWCDEKGDTICEICLQQYTPNYTAPAKL 114
Query: 68 VQVVETAVTVRAFFCRDEEMLPEELSQEDQEQYAGS---EAQTGNGDCSSWCRSLTITFT 124
Q ++ F R + ++ Q A S + + N +CR + +T
Sbjct: 115 FQHGRNSI-----FFRTPGYIQAQVMQNTDRSAAASTSYDPELPNPKGVIYCRIVALTLM 169
Query: 125 IMLLVWHLIAVVTIEAADHCAFS--LVTIFLLRAAGILLPFYAIM 167
++LL+ I+V DH A++ ++T+ +LR AGI++P Y I+
Sbjct: 170 VLLLLHDAISVFL---GDHDAYTVAMITLLMLRTAGIVIPVYIIL 211
>Os02g0577100 RINGv domain containing protein
Length = 250
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 92/166 (55%), Gaps = 13/166 (7%)
Query: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
IC EE+ +ESPC CSGSLKYAHR CVQRWC+EKG +CEIC +++ YT PP +
Sbjct: 34 ICQEED--LAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGYTAPP-Q 90
Query: 68 VQVVETAVTVRA---------FFCRDEEMLPEELSQEDQEQYAGSEAQTGNGDCSSWCRS 118
V ET + + + D +L +Q + E N + +++CRS
Sbjct: 91 VHHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYTATNNNAAAFCRS 150
Query: 119 LTITFTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFY 164
+ + +LL+ H + + + + D A ++ ++FLLRAAG LLP Y
Sbjct: 151 IFLILMALLLLRHTLTITSSDDEDD-ASAIFSLFLLRAAGFLLPCY 195
>Os01g0121200 RINGv domain containing protein
Length = 269
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 17/171 (9%)
Query: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
IC EE+ W ++E+PC C GSLKYAHR C+QRWC+EKG T+CEICLQ F+ YT P +
Sbjct: 57 ICQEED--WDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTAPQQL 114
Query: 68 VQVVETAVTVRAFF------CRDEE---MLPEELSQED-QEQYAGSEAQTGNGDCSSWCR 117
+ R + D + M+P E D E Y ++ + CR
Sbjct: 115 FHYGSIPMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSS----TLCCR 170
Query: 118 SLTITFTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFYAIMR 168
++ I F +L++ H + ++ I + +L ++ +LR AGIL P ++R
Sbjct: 171 TVAIIFMSLLVLRHTLPLM-IGGDGEYSLALFSLLVLRTAGILFPILVMVR 220
>Os08g0436200 RINGv domain containing protein
Length = 276
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 19/167 (11%)
Query: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
IC EE++ + +ESPC C+GSLKYAHR CVQRWCDEKG CEIC + ++ YT P+
Sbjct: 63 ICQEEDN--ISNLESPCACTGSLKYAHRACVQRWCDEKGDLTCEICHEPYKHGYTALPRA 120
Query: 68 VQVVET-------AVTVRAFFCRDEE---MLPEELSQEDQEQYAGSEAQTGNGDCSSWCR 117
T +T AF D M + + D + Y+ N +++CR
Sbjct: 121 HPDETTIDISGGWTITGTAFDLHDPRIIAMAQNHIMEADYDDYS-----VTNASSAAFCR 175
Query: 118 SLTITFTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFY 164
S + +M L+ +V + + A S+ +FLLR G LLPFY
Sbjct: 176 SAAL--ILMALLVLRHVLVLTDEDEDDASSMFLLFLLRVTGFLLPFY 220
>Os01g0894600 RINGv domain containing protein
Length = 219
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 14/169 (8%)
Query: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
IC EE DE A++SPC C+G+LK+AHR C+QRWCD+KG+ CEIC Q + +Y +PP K
Sbjct: 44 ICQEEGDE--GAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPTK 101
Query: 68 VQVVETAVTVRAFFC-----RDEEMLPEELSQEDQEQYAGSEAQTGNGDCSSWCRSLTIT 122
E + +R + D L ++++ Q + + N ++ CR T
Sbjct: 102 CCSAEMDMDLRQSWVGRIDPHDSHFLAIAIAEQQLLQAEFDDCVSSNSSGATCCR----T 157
Query: 123 FTIMLLVWHLIAVVTIEAADHCAFSLVTIFL---LRAAGILLPFYAIMR 168
++L++ L+ V + D T+ L+ AG LP Y I R
Sbjct: 158 VVLILMLLLLVRHVVVFVRDVSMLQDATVLFSATLQFAGFFLPCYVIAR 206
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,724,349
Number of extensions: 254600
Number of successful extensions: 956
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 944
Number of HSP's successfully gapped: 8
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)