Os08g0436200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RINGv domain containing protein.
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Os08g0436200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RINGv domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.83 | 0.297 | 2.77 | 0.0334 | 0.052 | -0.0387 | 0.0551 | 1.53 | 0.0715 | 9.81 | 0.6908 | 223 | -- | -- |
| 40.53 | 0.297 | 2.79 | -0.0055 | 0.0381 | 0.112 | 0.103 | -- | 0.0741 | 9.82 | 2.275 | 286 | -- | -- |
| 39.84 | 0.294 | 2.77 | 0.0357 | 0.0525 | -0.0426 | -- | 1.55 | 0.0713 | 9.48 | 0.7 | 222 | -- | -- |
| 40.54 | 0.297 | 2.79 | -0.0132 | 0.0418 | 0.135 | -- | -- | 0.0786 | 12.9 | 2.4 | 286 | -- | -- |
| 39.99 | 0.295 | 2.78 | 0.0316 | -- | -0.0124 | -- | 1.55 | 0.0727 | -- | 0.7 | 223 | -- | -- |
| 40.77 | 0.299 | 2.79 | 0.0194 | 0.0647 | -- | 0.145 | -- | 0.0666 | 8.29 | -- | -- | -- | -- |
| 40.83 | 0.299 | 2.79 | 0.024 | 0.0642 | -- | -- | -- | 0.0666 | 8.55 | -- | -- | -- | -- |
| 40.65 | 0.297 | 2.79 | -0.00986 | -- | 0.13 | -- | -- | 0.0788 | -- | 2.4 | 346 | -- | -- |
| 40.54 | 0.297 | 2.79 | -- | 0.0422 | 0.135 | -- | -- | 0.0789 | 13 | 2.4 | 286 | -- | -- |
| 41.07 | 0.299 | 2.79 | 0.0242 | -- | -- | -- | -- | 0.0672 | -- | -- | -- | -- | -- |
| 40.85 | 0.299 | 2.79 | -- | 0.0643 | -- | -- | -- | 0.0639 | 8.52 | -- | -- | -- | -- |
| 40.65 | 0.297 | 2.79 | -- | -- | 0.128 | -- | -- | 0.0796 | -- | 2.403 | 346 | -- | -- |
| 41.08 | 0.299 | 2.79 | -- | -- | -- | -- | -- | 0.0645 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.78 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 6 | 1 |
| 2 | 36.78 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 4 | 36.86 | radiation | 10 | 30 | < th | dose independent | rect. | 6 | 1 |
| 6 | 36.89 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 15 | 37.50 | wind | 3 | 30 | > th | dose independent | rect. | 6 | 1 |
| 16 | 37.69 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 16 |
| 18 | 37.76 | radiation | 20 | 90 | > th | dose dependent | rect. | 15 | 2 |
| 34 | 37.81 | wind | 1 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 52 | 38.02 | radiation | 30 | 30 | > th | dose independent | rect. | 15 | 1 |
| 246 | 38.15 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 2 |
| 275 | 38.15 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 340 | 38.25 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 19 |
| 388 | 38.29 | humidity | 60 | 10 | < th | dose independent | sin | 12 | NA |
| 396 | 38.31 | humidity | 60 | 10 | < th | dose dependent | sin | 12 | NA |
| 399 | 38.35 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 400 | 38.35 | radiation | 1 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 405 | 38.36 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 19 |
| 407 | 38.37 | humidity | 60 | 10 | > th | dose independent | sin | 12 | NA |
| 409 | 38.37 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 1 |
| 414 | 38.39 | radiation | 10 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 455 | 38.50 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 564 | 38.63 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 1 |
| 630 | 38.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 632 | 38.69 | radiation | 30 | 30 | < th | dose dependent | sin | 13 | NA |
| 655 | 38.70 | humidity | 80 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 701 | 38.72 | wind | 3 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 747 | 38.77 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 1 |
| 763 | 38.77 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 772 | 38.78 | wind | 1 | 30 | < th | dose independent | rect. | 6 | 1 |
| 800 | 38.81 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 845 | 38.83 | radiation | 20 | 90 | > th | dose independent | sin | 13 | NA |
| 876 | 38.86 | radiation | 1 | 30 | > th | dose independent | rect. | 14 | 17 |
| 877 | 38.86 | radiation | 1 | 30 | > th | dose dependent | sin | 13 | NA |
| 992 | 38.93 | radiation | 1 | 10 | > th | dose independent | rect. | 6 | 1 |