Os09g0413000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0413000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.93 | 0.182 | 12.1 | -0.482 | 0.394 | 0.0499 | -0.0595 | -1.58 | -0.000961 | 3.98 | 19.3 | 837 | -- | -- |
| 16.46 | 0.19 | 12 | -0.103 | 0.357 | -0.286 | -0.17 | -- | 0.0865 | 3.94 | 29.6 | 2206 | -- | -- |
| 14.92 | 0.18 | 12.1 | -0.48 | 0.395 | 0.0527 | -- | -1.56 | 0.00402 | 4.03 | 19.02 | 886 | -- | -- |
| 16.54 | 0.191 | 12 | -0.102 | 0.358 | -0.273 | -- | -- | 0.0878 | 4.01 | 29.6 | 2206 | -- | -- |
| 21.28 | 0.215 | 12 | -0.164 | -- | -0.355 | -- | -0.806 | 0.125 | -- | 18.59 | 155 | -- | -- |
| 17.19 | 0.194 | 12 | -0.119 | 0.394 | -- | -0.102 | -- | 0.0965 | 3.92 | -- | -- | -- | -- |
| 17.22 | 0.194 | 12 | -0.118 | 0.394 | -- | -- | -- | 0.0971 | 3.96 | -- | -- | -- | -- |
| 19.98 | 0.208 | 12 | -0.0365 | -- | -0.473 | -- | -- | 0.147 | -- | 24.4 | 123 | -- | -- |
| 16.81 | 0.192 | 12 | -- | 0.354 | -0.291 | -- | -- | 0.0984 | 4.02 | 29.6 | 2206 | -- | -- |
| 25.7 | 0.237 | 12 | -0.102 | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
| 17.59 | 0.196 | 12 | -- | 0.391 | -- | -- | -- | 0.11 | 3.97 | -- | -- | -- | -- |
| 20 | 0.208 | 12 | -- | -- | -0.471 | -- | -- | 0.153 | -- | 24.4 | 133 | -- | -- |
| 25.97 | 0.238 | 12 | -- | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.86 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 14.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 7 | 14.97 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 7 |
| 21 | 14.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 23 | 14.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 24 | 14.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 34 | 14.98 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 36 | 14.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 45 | 14.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 56 | 15.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 65 | 15.01 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 69 | 15.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 17 |
| 82 | 15.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 85 | 15.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 111 | 15.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 112 | 15.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 116 | 15.03 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 124 | 15.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 13 |
| 125 | 15.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 144 | 15.04 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 156 | 15.05 | temperature | 30 | 720 | < th | dose independent | sin | 2 | NA |
| 224 | 15.07 | temperature | 25 | 720 | > th | dose dependent | sin | 1 | NA |
| 279 | 15.09 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 402 | 15.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 3 |
| 430 | 15.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 22 |
| 456 | 15.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 493 | 15.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 21 |
| 506 | 15.18 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 541 | 15.19 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 580 | 15.20 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 582 | 15.20 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 609 | 15.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 650 | 15.22 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 651 | 15.22 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 653 | 15.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 711 | 15.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 713 | 15.23 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 719 | 15.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 13 |
| 767 | 15.24 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 774 | 15.24 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 23 |
| 777 | 15.24 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 815 | 15.25 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 821 | 15.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 863 | 15.26 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 928 | 15.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 18 |
| 951 | 15.27 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 958 | 15.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 974 | 15.27 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |