BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0413000 Os09g0413000|AK062467
         (79 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47550.3  | chr3:17523841-17525278 FORWARD LENGTH=289           69   4e-13
AT5G62460.1  | chr5:25075545-25077072 FORWARD LENGTH=308           64   1e-11

>AT3G47550.3 | chr3:17523841-17525278 FORWARD LENGTH=289
          Length = 288

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/79 (45%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 1   DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSIXXXXXXXXXXXXXXXTEVAFILQSG--QG 58
           +DD +A FSLFLLRAAGFLLP YIMAWA+ I                EV F++  G  Q 
Sbjct: 209 EDDPTAFFSLFLLRAAGFLLPCYIMAWAIGILQRRRQRQEAAALAAAEVTFMIHGGGPQR 268

Query: 59  TGVHFTIAPDSPTTPQHEP 77
            G+HF +AP  P +    P
Sbjct: 269 RGLHFAVAPQPPISNVPTP 287



>AT5G62460.1 | chr5:25075545-25077072 FORWARD LENGTH=308
          Length = 307

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 1   DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSIXXXXXXXXXXXXXXXTEVAFILQS----- 55
           +DD SA F LF+LRAAGFLLP YIMAWA+SI                EVAF+L S     
Sbjct: 220 EDDPSAFFFLFMLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAAAEVAFMLHSGGGGG 279

Query: 56  -GQGTGVHFTIAPDSPTTPQHEPQ 78
             +  G+HF + P+  + P H+P+
Sbjct: 280 GQRRGGLHFAVPPELISNPHHQPE 303



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,446,851
Number of extensions: 31619
Number of successful extensions: 64
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 3
Length of query: 79
Length of database: 11,106,569
Length adjustment: 51
Effective length of query: 28
Effective length of database: 9,708,353
Effective search space: 271833884
Effective search space used: 271833884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)