BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0413000 Os09g0413000|AK062467
(79 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0413000 Hypothetical protein 127 2e-30
Os08g0436200 RINGv domain containing protein 103 2e-23
Os11g0600700 Similar to RING domain protein 83 4e-17
Os02g0577100 RINGv domain containing protein 80 3e-16
>Os09g0413000 Hypothetical protein
Length = 79
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 64/79 (81%)
Query: 1 DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSIXXXXXXXXXXXXXXXTEVAFILQSGQGTG 60
DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSI TEVAFILQSGQGTG
Sbjct: 1 DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSILQRRRQRQEAAALAATEVAFILQSGQGTG 60
Query: 61 VHFTIAPDSPTTPQHEPQP 79
VHFTIAPDSPTTPQHEPQP
Sbjct: 61 VHFTIAPDSPTTPQHEPQP 79
>Os08g0436200 RINGv domain containing protein
Length = 276
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 56/79 (70%)
Query: 1 DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSIXXXXXXXXXXXXXXXTEVAFILQSGQGTG 60
+DD S+MF LFLLR GFLLPFYIMAWA++I TEVAFILQSGQ G
Sbjct: 198 EDDASSMFLLFLLRVTGFLLPFYIMAWAINILQGRRRRQVAAALAATEVAFILQSGQRRG 257
Query: 61 VHFTIAPDSPTTPQHEPQP 79
++FTIAPDSP TPQHEP P
Sbjct: 258 MNFTIAPDSPATPQHEPIP 276
>Os11g0600700 Similar to RING domain protein
Length = 278
Score = 82.8 bits (203), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 46/72 (63%)
Query: 1 DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSIXXXXXXXXXXXXXXXTEVAFILQSGQGTG 60
DDD S MFSLFLLRAAGFLLP YIMAW SI EVAFILQS QG
Sbjct: 191 DDDASTMFSLFLLRAAGFLLPCYIMAWIFSILHRRRQRQEAAAIAAAEVAFILQSAQGHA 250
Query: 61 VHFTIAPDSPTT 72
+ FTIAPDSP T
Sbjct: 251 LQFTIAPDSPAT 262
>Os02g0577100 RINGv domain containing protein
Length = 250
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 1 DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSIXXXXXXXXXXXXXXXTEVAFILQSGQGTG 60
+DD SA+FSLFLLRAAGFLLP YIMAWA+SI TEVA IL G
Sbjct: 173 EDDASAIFSLFLLRAAGFLLPCYIMAWAISIMQRQRQRQEEAMLLPTEVAIILHRN-GRT 231
Query: 61 VHFTIAPDSPTTPQHE 76
+ F +AP+SPTTP E
Sbjct: 232 MQFAVAPESPTTPHPE 247
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,437,851
Number of extensions: 57189
Number of successful extensions: 138
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 4
Length of query: 79
Length of database: 17,035,801
Length adjustment: 50
Effective length of query: 29
Effective length of database: 14,425,101
Effective search space: 418327929
Effective search space used: 418327929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)