BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0479300 Os11g0479300|AK099761
(338 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0479300 RabGAP/TBC domain containing protein 703 0.0
Os04g0377600 Similar to TBC1 domain family member 13 499 e-142
Os01g0908100 RabGAP/TBC domain containing protein 432 e-121
Os09g0515800 RabGAP/TBC domain containing protein 115 5e-26
Os02g0709800 RabGAP/TBC domain containing protein 81 1e-15
Os02g0810500 RabGAP/TBC domain containing protein 78 1e-14
Os07g0525400 RabGAP/TBC domain containing protein 77 1e-14
Os09g0528800 RabGAP/TBC domain containing protein 77 2e-14
Os08g0547200 RabGAP/TBC domain containing protein 77 2e-14
Os06g0661700 RabGAP/TBC domain containing protein 69 4e-12
>Os11g0479300 RabGAP/TBC domain containing protein
Length = 338
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 TWGSCGGSPASACRTAAPPSARSSGSVQLLLGYLPTERAFWPHELEKKRSQYSAYKDEFL 60
TWGSCGGSPASACRTAAPPSARSSGSVQLLLGYLPTERAFWPHELEKKRSQYSAYKDEFL
Sbjct: 1 TWGSCGGSPASACRTAAPPSARSSGSVQLLLGYLPTERAFWPHELEKKRSQYSAYKDEFL 60
Query: 61 LNPSEKIRRFEESKLLRKKELNSDKIGLLPRAKVTNEEHPLSFGKSSLWNQYFQESEILE 120
LNPSEKIRRFEESKLLRKKELNSDKIGLLPRAKVTNEEHPLSFGKSSLWNQYFQESEILE
Sbjct: 61 LNPSEKIRRFEESKLLRKKELNSDKIGLLPRAKVTNEEHPLSFGKSSLWNQYFQESEILE 120
Query: 121 QIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKNDP 180
QIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKNDP
Sbjct: 121 QIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKNDP 180
Query: 181 DTSNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWRHM 240
DTSNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWRHM
Sbjct: 181 DTSNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWRHM 240
Query: 241 EITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDPEGPPDTLLRICCAMLILVRR 300
EITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDPEGPPDTLLRICCAMLILVRR
Sbjct: 241 EITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDPEGPPDTLLRICCAMLILVRR 300
Query: 301 RLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 338
RLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS
Sbjct: 301 RLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 338
>Os04g0377600 Similar to TBC1 domain family member 13
Length = 316
Score = 499 bits (1286), Expect = e-142, Method: Compositional matrix adjust.
Identities = 234/314 (74%), Positives = 270/314 (85%), Gaps = 5/314 (1%)
Query: 28 QLLLGYLPTERAFWPHELEKKRSQYSAYKDEFLLNPSEKIRRFEESKLLRKKELNSDKIG 87
QLLLGYLPT+ A W +ELEKKRSQYSA+KDE L+NPSE RR EE + + NS+ G
Sbjct: 1 QLLLGYLPTDHALWAYELEKKRSQYSAFKDELLVNPSEVTRRMEEMTISKGNRHNSEGTG 60
Query: 88 LLPRAKVTNEEHPLSFGKSSLWNQYFQESEILEQIDRDVKRTHPEMPFFS-----AKANQ 142
+LPRA++ ++EHPLS GK+S+WNQ+FQESE +EQIDRDVKRTHPEM FF+ A +NQ
Sbjct: 61 VLPRAEIVHDEHPLSLGKTSVWNQFFQESETIEQIDRDVKRTHPEMQFFNGDSSDALSNQ 120
Query: 143 ESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKNDPDTSNSASAEADTFFCFVELLSG 202
ESL+R+L IF+KLNP IRYVQGMNEVLAPL+YVFKNDP+ +N+ SAE D FFCFVELLSG
Sbjct: 121 ESLKRILTIFAKLNPGIRYVQGMNEVLAPLYYVFKNDPEENNAESAEPDAFFCFVELLSG 180
Query: 203 FKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWRHMEITTKVYPQYYAFRWITLLLTM 262
F+DN+CK LDNS VGIRST+SKLSQLLKRHDEELWRH+E+ TKV PQ+YAFRWITLLLT
Sbjct: 181 FRDNFCKQLDNSVVGIRSTISKLSQLLKRHDEELWRHLEVVTKVNPQFYAFRWITLLLTQ 240
Query: 263 EFSFNVCIHIWDAILGDPEGPPDTLLRICCAMLILVRRRLLAGDFTANIQLLQHYPPTNI 322
EF F CIHIWDA+LGDPEGP TLLRICCAMLILVRRRLLAGDFTAN++LLQ YPPTNI
Sbjct: 241 EFKFRDCIHIWDALLGDPEGPQATLLRICCAMLILVRRRLLAGDFTANLKLLQSYPPTNI 300
Query: 323 DHLLHIANRLRGSV 336
DHLLHIAN+LRG +
Sbjct: 301 DHLLHIANKLRGPI 314
>Os01g0908100 RabGAP/TBC domain containing protein
Length = 368
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/312 (66%), Positives = 257/312 (82%), Gaps = 10/312 (3%)
Query: 28 QLLLGYLPTERAFWPHELEKKRSQYSAYKDEFLLNPSEKIRRFEESKLLRKKELNSDKI- 86
+LLLGYLP++RA W EL KKRSQY+A+K+EFL NP E R+ E L + N+ I
Sbjct: 59 KLLLGYLPSDRALWEQELAKKRSQYAAFKEEFLSNPMEIARQRE---LEGQGSENAGSIY 115
Query: 87 -GLLPRAKVTNEEHPLSFGKSSLWNQYFQESEILEQIDRDVKRTHPEMPFFS-----AKA 140
GLL R++VT EEHPLS GK++ WNQ+F+ SEI+EQIDRDVKRTHP+M FF AK+
Sbjct: 116 NGLLHRSEVTQEEHPLSLGKTTAWNQFFEYSEIIEQIDRDVKRTHPDMHFFCGDSSFAKS 175
Query: 141 NQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKNDPDTSNSASAEADTFFCFVELL 200
NQESL+ +LIIF+KLN IRYVQGMNE+LAPLF+VF+NDPD N+ AEAD+FFCF+ELL
Sbjct: 176 NQESLKNILIIFAKLNAGIRYVQGMNEILAPLFFVFRNDPDDKNANFAEADSFFCFMELL 235
Query: 201 SGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWRHMEITTKVYPQYYAFRWITLLL 260
SGF+DN+C+ LDNS VGI+ TLSKLSQL+ ++D EL R++EITT++ PQ+YAFRWITLLL
Sbjct: 236 SGFRDNFCQKLDNSAVGIQGTLSKLSQLVAKYDGELQRYLEITTEINPQFYAFRWITLLL 295
Query: 261 TMEFSFNVCIHIWDAILGDPEGPPDTLLRICCAMLILVRRRLLAGDFTANIQLLQHYPPT 320
T EF+F IHIWD +L DP+GP +TLLRICCAMLILVR+RLLAGDFT+N++LLQ+YPPT
Sbjct: 296 TQEFNFADTIHIWDTLLSDPDGPQETLLRICCAMLILVRKRLLAGDFTSNLKLLQNYPPT 355
Query: 321 NIDHLLHIANRL 332
NI HLL++AN+L
Sbjct: 356 NISHLLYVANKL 367
>Os09g0515800 RabGAP/TBC domain containing protein
Length = 444
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 18/224 (8%)
Query: 114 QESEILEQIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLF 173
+E +L QI D RT P++ FF Q+SL R+L ++ +P YVQG+N++L P
Sbjct: 200 EEINMLRQIAVDCPRTVPDVTFFQHPQIQKSLERILYTWAIRHPASGYVQGINDLLTPFL 259
Query: 174 YVF-----KNDPDT--------SNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRS 220
VF + + DT + ++ EAD ++C + L G +D+Y +Q GI+
Sbjct: 260 VVFLSEHLEGNMDTWSMEKLSPQDVSNIEADCYWCLSKFLDGMQDHYT----FAQPGIQR 315
Query: 221 TLSKLSQLLKRHDEELWRHMEITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDP 280
+ +L +L+ R DE + +HME + Q +AFRW L+ E F++ +WD L +
Sbjct: 316 LVFRLKELVHRIDEPVSKHMEEQGLDFLQ-FAFRWFNCLMIREIPFHLVTRLWDTYLAEG 374
Query: 281 EGPPDTLLRICCAMLILVRRRLLAGDFTANIQLLQHYPPTNIDH 324
+ PD L+ I + L+ +L DF + LQH P N H
Sbjct: 375 DYLPDFLVYISASFLLTWSDKLKKLDFQEMVMFLQHLPTRNWAH 418
>Os02g0709800 RabGAP/TBC domain containing protein
Length = 679
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 122 IDRDVKRTHPEMPFFSAKANQESL--RRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKND 179
ID+DV RT +P++ NQ L R +L+ +S N + Y QGM++ LAP+ YV ++
Sbjct: 444 IDKDVVRTDRSVPYYEGDDNQNVLVLRDILLTYSFYNFDLGYCQGMSDFLAPILYVMED- 502
Query: 180 PDTSNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWRH 239
E+++F+CF L+ N+ + Q G+ + L LS+L++ D +L +
Sbjct: 503 ---------ESESFWCFAILMERLGANFNR----DQNGMHAQLLALSKLVELLDPQLHNY 549
Query: 240 MEITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDPEGPPDTLLRICCAMLILVR 299
++ FRW+ + EFSF+ + +W+ +L L +C A+L R
Sbjct: 550 FR-KNDCLNYFFCFRWVLIQFKREFSFDQIMLLWE-VLWTHYWSEHFHLYLCVAILKRYR 607
Query: 300 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSV 336
R++ + D LL N L G +
Sbjct: 608 SRIIG-------------EQMDFDTLLKFINELSGEI 631
>Os02g0810500 RabGAP/TBC domain containing protein
Length = 427
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 15/157 (9%)
Query: 119 LEQIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKN 178
L QI DV RT ++ ++ ++ N L +L ++S ++ I Y QGM+++ +P+ + ++
Sbjct: 172 LHQIGLDVNRTDRQLVYYESQENLARLWDILAVYSWVDKDIGYCQGMSDLCSPMSILLEH 231
Query: 179 DPDTSNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWR 238
EAD F+CF L+ + N+ ++ +G+RS L+ LS ++K D +L
Sbjct: 232 ----------EADAFWCFERLMRRVRGNFVSS--STSIGVRSQLTILSSVMKAVDPKLHE 279
Query: 239 HME-ITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWD 274
H+E + Y +AFR + +L EFSF +++W+
Sbjct: 280 HLENLDGGEY--LFAFRMLMVLFRREFSFVDTMYLWE 314
>Os07g0525400 RabGAP/TBC domain containing protein
Length = 451
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 119 LEQIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKN 178
L QI DV RT M F+ K N L +L +++ ++ + Y QGM+++ +P+ + K+
Sbjct: 185 LHQIGLDVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIVLLKD 244
Query: 179 DPDTSNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWR 238
EAD F+CF +L+ + N+ K D S VG+ + L L+ +++ D +L
Sbjct: 245 ----------EADAFWCFEKLMRRLRGNF-KCTDQS-VGVANQLQYLASIIQVLDPKLHD 292
Query: 239 HMEITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDPEGPPDTLLRIC 291
H+EI +AFR +L E SF +++W+ + E PD C
Sbjct: 293 HLEILGG-GDYLFAFRMFMVLFRREVSFGDSLYLWEMMWA-LEYDPDIFFAAC 343
>Os09g0528800 RabGAP/TBC domain containing protein
Length = 579
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 38/211 (18%)
Query: 124 RDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKNDPDTS 183
RD P M + +A+ L +L ++ +P I Y QGM+++L+P+ V + D +
Sbjct: 361 RDYDHLDPSMIYHAAR-----LVGLLEAYAVYDPEIGYCQGMSDLLSPIIAVMEEDDEA- 414
Query: 184 NSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWRHMEIT 243
F+CFV + + N+ LD +VGIR L +SQ++KR D L++H++
Sbjct: 415 ---------FWCFVGFMRKARHNF--RLD--EVGIRRQLKIVSQIIKRKDSHLYKHLQ-K 460
Query: 244 TKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDPEG------------------PPD 285
+ ++ +R + +L E +F + +W+ + D P D
Sbjct: 461 LQAEDCFFVYRMVVVLFRRELTFEQTVCLWEVMWADQAAIRAGIGRSTWAKIRLRAPPTD 520
Query: 286 TLLRICCAMLILVRRRLLAGDFTANIQLLQH 316
LL A +L RR+L+ +++ ++L+
Sbjct: 521 DLLLYAIAACVLQRRKLIIEKYSSMDEILRE 551
>Os08g0547200 RabGAP/TBC domain containing protein
Length = 565
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 38/210 (18%)
Query: 124 RDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIRYVQGMNEVLAPLFYVFKNDPDTS 183
+D P M + +A+ L VL ++ +P I Y QGM+++L+P+ V + D
Sbjct: 347 KDYDHLEPYMIYHAAR-----LVAVLEAYALFDPEIGYCQGMSDLLSPIIVVMEED---- 397
Query: 184 NSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGIRSTLSKLSQLLKRHDEELWRHMEIT 243
+ F+CFV + + N+ LD +VGIR L +SQ++KR D L+RH++
Sbjct: 398 ------HEAFWCFVGFMRKARHNF--RLD--EVGIRRQLKIVSQIIKRKDSHLYRHLQ-K 446
Query: 244 TKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAILGDPEG------------------PPD 285
+ ++ +R + +L E +F + +W+ + D P D
Sbjct: 447 LQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGRSTWSKIRLHAPPTD 506
Query: 286 TLLRICCAMLILVRRRLLAGDFTANIQLLQ 315
LL A +L +R+L+ +++ ++L+
Sbjct: 507 DLLLYAIAACVLQKRKLIIERYSSMDEILR 536
>Os06g0661700 RabGAP/TBC domain containing protein
Length = 705
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 98 EHPLSFGKSSLWNQYFQESEILEQIDRDVKRTHPEMP-FFSAKANQESLRRVLIIFSKLN 156
E+PLS S W QYF+ +E+ + +++D+ R +PE+ FF Q L R+L+++S
Sbjct: 73 ENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQTTICQSMLGRILLVWSLRY 132
Query: 157 PTIRYVQGMNEVLAPLFYVFKND 179
P + Y QGM+E+LAPL YV D
Sbjct: 133 PELGYKQGMHELLAPLLYVLHAD 155
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,890,823
Number of extensions: 477605
Number of successful extensions: 1301
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1289
Number of HSP's successfully gapped: 10
Length of query: 338
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 237
Effective length of database: 11,762,187
Effective search space: 2787638319
Effective search space used: 2787638319
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)