BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0224300 Os11g0224300|AK106705
(383 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0224300 Integrase, catalytic region domain containing ... 761 0.0
Os06g0266100 Integrase, catalytic region domain containing ... 343 1e-94
Os08g0123950 Integrase, catalytic region domain containing ... 332 3e-91
Os04g0682600 Integrase, catalytic region domain containing ... 323 1e-88
Os06g0493000 RNA-directed DNA polymerase (Reverse transcrip... 301 6e-82
Os06g0713500 Integrase, catalytic region domain containing ... 254 6e-68
Os04g0389000 Integrase, catalytic region domain containing ... 228 4e-60
Os04g0191000 Retrotransposon gag protein family protein 219 4e-57
Os10g0317000 Retrotransposon gag protein family protein 217 9e-57
Os03g0377400 Chromo domain containing protein 169 3e-42
Os09g0491900 Integrase, catalytic region domain containing ... 155 4e-38
Os09g0250500 Integrase, catalytic region domain containing ... 155 5e-38
Os04g0283700 Chromo domain containing protein 125 6e-29
Os10g0383200 Chromo domain containing protein 122 3e-28
Os06g0638300 105 5e-23
Os08g0355201 Integrase, catalytic region domain containing ... 68 1e-11
>Os11g0224300 Integrase, catalytic region domain containing protein
Length = 383
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/383 (95%), Positives = 367/383 (95%)
Query: 1 GLSASSVSILRFIYVWNCILLVVLCTLAGPGQGFNTQNSLEIWVKFLGVTSMDFIEGLPK 60
GLSASSVSILRFIYVWNCILLVVLCTLAGPGQGFNTQNSLEIWVKFLGVTSMDFIEGLPK
Sbjct: 1 GLSASSVSILRFIYVWNCILLVVLCTLAGPGQGFNTQNSLEIWVKFLGVTSMDFIEGLPK 60
Query: 61 SEGYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQVIISDRDKIFTS 120
SEGYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQVIISDRDKIFTS
Sbjct: 61 SEGYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQVIISDRDKIFTS 120
Query: 121 ALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHWSKWLSQVQHW 180
ALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHWSKWLSQVQHW
Sbjct: 121 ALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHWSKWLSQVQHW 180
Query: 181 YNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMNEVLHQQLTRAQ 240
YNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMNEVLHQQLTRAQ
Sbjct: 181 YNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMNEVLHQQLTRAQ 240
Query: 241 QRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKLCFRYFGPYKILERIGEVA 300
QRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKLCFRYFGPYKILERIGEVA
Sbjct: 241 QRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKLCFRYFGPYKILERIGEVA 300
Query: 301 YKLDXXXXXXXXXXXXXXXXKKAIRPDVQVQADLPASCMAEDAAIFPEEILHRQLIKRGN 360
YKLD KKAIRPDVQVQADLPASCMAEDAAIFPEEILHRQLIKRGN
Sbjct: 301 YKLDLPPQSQVHPVVHVSLLKKAIRPDVQVQADLPASCMAEDAAIFPEEILHRQLIKRGN 360
Query: 361 AAVPYGLVRWTGLPAALATWENL 383
AAVPYGLVRWTGLPAALATWENL
Sbjct: 361 AAVPYGLVRWTGLPAALATWENL 383
>Os06g0266100 Integrase, catalytic region domain containing protein
Length = 399
Score = 343 bits (881), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/329 (50%), Positives = 221/329 (67%), Gaps = 4/329 (1%)
Query: 55 IEGLPKSEGYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQVIISDR 114
IEGLP+S Y+ ILVVVDKFSK+ F+PLSHPFTA+ VA F+ N+Y + G+PQ IISDR
Sbjct: 1 IEGLPRSSSYNCILVVVDKFSKYGHFLPLSHPFTAIDVAKTFMLNIYKLHGLPQTIISDR 60
Query: 115 DKIFTSALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHWSKWL 174
DKIFTS LW++LF + +L++S++YHPQ+DGQTER+NQCLE YLRC H+ P W+ WL
Sbjct: 61 DKIFTSQLWEQLFTRSGTQLHLSTAYHPQSDGQTERVNQCLEIYLRCFTHATPSKWAVWL 120
Query: 175 SQVQHWYNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMNEVLHQ 234
+ WYNTA+HSAL+ SP+EVL+ P FG I D +P++ VWL+ER M+ ++ Q
Sbjct: 121 HLAEFWYNTAFHSALNTSPFEVLYGHPPRYFG-IHSEDCAIPELQVWLKERRLMHSLIQQ 179
Query: 235 QLTRAQQRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKLCFRYFGPYKILE 294
L RAQQ MK ADK RS R F +GD VY+KLQPYVQ SVA R+ KL FRYFGP+++++
Sbjct: 180 HLNRAQQHMKNMADKKRSFRSFELGDWVYIKLQPYVQSSVAARANHKLAFRYFGPFQVIQ 239
Query: 295 RIGEVAYKLDXXXXXXXXXXXXXXXXKKAIRPDVQVQADLPASCMAEDAAIFPEEILHRQ 354
+ G VAYKL K A + + LP+S +DA +P +L +
Sbjct: 240 KFGSVAYKLQLPTTSSIHPVFHVSQLKAAKGFQGALHSTLPSS---DDAFQYPIMLLDNR 296
Query: 355 LIKRGNAAVPYGLVRWTGLPAALATWENL 383
LIK+GN V L++W+ ATWE+L
Sbjct: 297 LIKKGNTTVSQVLIQWSDTAVEDATWEDL 325
>Os08g0123950 Integrase, catalytic region domain containing protein
Length = 783
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 168/333 (50%), Positives = 217/333 (65%), Gaps = 4/333 (1%)
Query: 51 SMDFIEGLPKSEGYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQVI 110
S+DFIEGLP+S Y+ ILVVVDKFSK++ FIPL HPFTA+ VA AF+ NVY + G+PQ+I
Sbjct: 365 SLDFIEGLPRSSHYNCILVVVDKFSKYSHFIPLRHPFTAIDVAKAFMSNVYKLHGLPQII 424
Query: 111 ISDRDKIFTSALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHW 170
ISDRDKIFTS LW++LF + KL+ SS+YHPQ+DGQTER NQCLE YL+C V S P W
Sbjct: 425 ISDRDKIFTSQLWEQLFLRSGTKLHYSSAYHPQSDGQTERGNQCLEIYLKCFVQSAPSKW 484
Query: 171 SKWLSQVQHWYNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMNE 230
WL ++WYN +YHS +D++P+E L+ P FG I + D ++ W+Q+R M +
Sbjct: 485 PSWLHLAEYWYNNSYHSTIDRTPFEALYGYPPRHFG-ISIRDCDNSELITWMQDRKLMQQ 543
Query: 231 VLHQQLTRAQQRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKLCFRYFGPY 290
++ Q L RAQQ+MK ADK RS R F VG+ VYLKLQPYVQ SVA R+ KL F+YFGP+
Sbjct: 544 LVQQHLHRAQQQMKLFADKKRSFRQFQVGEWVYLKLQPYVQSSVAPRANHKLAFKYFGPF 603
Query: 291 KILERIGEVAYKLDXXXXXXXXXXXXXXXXKKAIRPDVQVQADLPASCMAEDAAIFPEEI 350
+ILE++G VAYKL K+A V L + A +P +
Sbjct: 604 QILEKLGTVAYKLQLPATSSIHPVFHVSLLKEAKGFQPSVHTPLSPTY---SAVQYPIAL 660
Query: 351 LHRQLIKRGNAAVPYGLVRWTGLPAALATWENL 383
L +L K+GN V L W+ A ATWE+L
Sbjct: 661 LDHRLTKKGNHTVHQVLTHWSDTIPAQATWEDL 693
>Os04g0682600 Integrase, catalytic region domain containing protein
Length = 395
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 151/304 (49%), Positives = 202/304 (66%)
Query: 80 FIPLSHPFTALQVATAFIKNVYDIFGMPQVIISDRDKIFTSALWQELFKLADVKLNMSSS 139
F+PL HPFTA VA F+++++ I G+PQ I+SDRD++FTS+LW+ELF+ A +L MSSS
Sbjct: 31 FLPLKHPFTAFGVAQLFMEHIHSIHGLPQAIVSDRDRVFTSSLWKELFRRAGTQLRMSSS 90
Query: 140 YHPQTDGQTERLNQCLEAYLRCAVHSCPKHWSKWLSQVQHWYNTAYHSALDKSPYEVLFA 199
YHPQ+DGQTER+NQC+E +LRC VHSCP W WL+ Q+WYNT++HSAL +P+EVLF
Sbjct: 91 YHPQSDGQTERVNQCVEMFLRCFVHSCPSRWKHWLALAQYWYNTSFHSALGMTPFEVLFG 150
Query: 200 RKPTPFGLIDVGDSMVPDVHVWLQERAHMNEVLHQQLTRAQQRMKYQADKHRSKRVFNVG 259
KP FGL D+ WL ER MN ++H L RAQQRMK QAD RS+R F VG
Sbjct: 151 HKPRYFGLSTSSVDAPGDLASWLSERNDMNTLIHHHLLRAQQRMKSQADSKRSERCFAVG 210
Query: 260 DMVYLKLQPYVQMSVAKRSCQKLCFRYFGPYKILERIGEVAYKLDXXXXXXXXXXXXXXX 319
D V++KLQPY+Q SV RS +KL F+Y+GP+++L+RIG VAY+L
Sbjct: 211 DWVFMKLQPYIQQSVMTRSNRKLSFKYYGPFQVLQRIGLVAYRLQLPAHSLIHPVVHVSQ 270
Query: 320 XKKAIRPDVQVQADLPASCMAEDAAIFPEEILHRQLIKRGNAAVPYGLVRWTGLPAALAT 379
KKA+ P VQ LP P +IL + I+RG+ + L+RW+G+ ++ T
Sbjct: 271 LKKALAPSEAVQPSLPVLNPDAGHLAIPIKILDHRSIRRGSKMIKQVLIRWSGVSSSADT 330
Query: 380 WENL 383
WE+L
Sbjct: 331 WESL 334
>Os06g0493000 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 866
Score = 301 bits (771), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/332 (45%), Positives = 204/332 (61%)
Query: 51 SMDFIEGLPKSEGYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQVI 110
+MDF+EGLPKSEG D I V+VD+F+K+A FIPLSHPFTA Q+ T F+++ Y + G+P VI
Sbjct: 522 TMDFVEGLPKSEGKDVIWVIVDRFTKYAHFIPLSHPFTADQILTQFLEHFYKLHGLPTVI 581
Query: 111 ISDRDKIFTSALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHW 170
+SDRD+IFTS+ W+E+F+ A VKL+ SS+YHPQTDGQ+ER+NQCLE YLRC S P+ W
Sbjct: 582 VSDRDRIFTSSTWKEVFEKAGVKLHFSSAYHPQTDGQSERVNQCLENYLRCMTSSKPRKW 641
Query: 171 SKWLSQVQHWYNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMNE 230
L + WYNT +H++L SPY+ L KP + + S++ + +A + E
Sbjct: 642 KALLPHAEWWYNTTFHTSLGMSPYQALHGIKPPLLAELLLPGSLLEGERNKQEAKAALLE 701
Query: 231 VLHQQLTRAQQRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKLCFRYFGPY 290
+ L +AQ RMKY AD+HR +R VGDMVYLK+QPY S+ S KL RY+GP+
Sbjct: 702 TIKSHLVKAQARMKYFADQHRQERTLEVGDMVYLKMQPYRHNSLGLHSSLKLHSRYYGPF 761
Query: 291 KILERIGEVAYKLDXXXXXXXXXXXXXXXXKKAIRPDVQVQADLPASCMAEDAAIFPEEI 350
++LERIG VAYKL KK + + LP P +
Sbjct: 762 RVLERIGSVAYKLLLPVTSQIHHVFHVSQLKKHLGSRAVPEQGLPLIDAEGRILSTPLAV 821
Query: 351 LHRQLIKRGNAAVPYGLVRWTGLPAALATWEN 382
L R+LI R N V + W LP + ATWE+
Sbjct: 822 LDRRLIPRNNEPVVQWKIHWANLPESAATWED 853
>Os06g0713500 Integrase, catalytic region domain containing protein
Length = 248
Score = 254 bits (650), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 115/208 (55%), Positives = 161/208 (77%), Gaps = 1/208 (0%)
Query: 97 IKNVYDIFGMPQVIISDRDKIFTSALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLE 156
++NVY + GMP+VIISDRD+IFTS W+ LF +A +KL+MSSSYHPQ+DGQTER+NQCLE
Sbjct: 1 MRNVYRLHGMPKVIISDRDRIFTSQFWECLFTMAGIKLHMSSSYHPQSDGQTERVNQCLE 60
Query: 157 AYLRCAVHSCPKHWSKWLSQVQHWYNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVP 216
+LRC +H+ P+ W+ WL + WY ++Y S + K+P+EV++ +P+ FG I + D +VP
Sbjct: 61 IFLRCFIHATPRKWAAWLYLAEFWYYSSYQSTVHKTPFEVVYGYQPSHFG-ISMEDCVVP 119
Query: 217 DVHVWLQERAHMNEVLHQQLTRAQQRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAK 276
D+ WL +R M+ ++ Q L RAQQ+MK+ ADK+RS R F + D VYLK+QPYV+ SVAK
Sbjct: 120 DLAEWLSDRKFMHHLIQQHLHRAQQQMKFYADKNRSFREFQLQDWVYLKVQPYVKSSVAK 179
Query: 277 RSCQKLCFRYFGPYKILERIGEVAYKLD 304
R+ KL FRY+GP++IL+++G VAYKLD
Sbjct: 180 RANHKLSFRYYGPFQILQKVGSVAYKLD 207
>Os04g0389000 Integrase, catalytic region domain containing protein
Length = 538
Score = 228 bits (582), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 165/256 (64%), Gaps = 6/256 (2%)
Query: 51 SMDFIEGLPKSEGYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQVI 110
+MDF+EGLP+ G IL VVD+FSKFA FIP++HP+TA VA AF + + G+P I
Sbjct: 160 AMDFVEGLPRVHGKTVILTVVDRFSKFAHFIPMAHPYTATSVAAAFFSEIVRLHGVPASI 219
Query: 111 ISDRDKIFTSALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHW 170
+SDRD +FTS W+ELF+LA V+LN+SS++HPQ+DGQ+E N+ + YLRC P+HW
Sbjct: 220 VSDRDPVFTSTFWRELFRLAGVRLNLSSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRHW 279
Query: 171 SKWLSQVQHWYNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMNE 230
+WL ++ YNT+Y S+L SP+ V++ R+P + G + + V +Q+R
Sbjct: 280 LRWLPWAEYCYNTSYQSSLRTSPFRVVYGREPPTLRAYEPGSTRLLAVQQAMQDRDEFLR 339
Query: 231 VLHQQLTRAQQRMKYQAD-KHRSKRVFNVGDMVYLKL--QPYVQMSVAKRSCQKLCFRYF 287
+ +L +AQQ K D KHR+ F+VGD ++L+L +P + V R KL +++
Sbjct: 340 EIRDRLEQAQQTHKSAYDGKHRALE-FSVGDWLWLRLLHRPIASLGVTGRG--KLGPKFY 396
Query: 288 GPYKILERIGEVAYKL 303
G Y++ ERIG VAY+L
Sbjct: 397 GLYRVAERIGSVAYRL 412
>Os04g0191000 Retrotransposon gag protein family protein
Length = 1463
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/334 (37%), Positives = 179/334 (53%), Gaps = 7/334 (2%)
Query: 51 SMDFIEGLPKSEGYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQVI 110
++DFIE LP+ G IL VVD+FSK+ FIPL+HP++A VA AF + + G+PQ +
Sbjct: 1063 ALDFIEALPRVRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHGVPQSM 1122
Query: 111 ISDRDKIFTSALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHW 170
+SDRD IFTS W+EL +L KL+M++++HPQ+DGQ+E N+ + YLRC P+ W
Sbjct: 1123 VSDRDPIFTSTFWRELMRLMGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQW 1182
Query: 171 SKWLSQVQHWYNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMNE 230
+WL + +NTAY S+L +P+ V++ R P + GD+ V V ++ERA
Sbjct: 1183 LRWLPWAEFIFNTAYQSSLRDTPFRVVYGRDPPSIRSYEAGDTRVAAVAKSMEERAEFLF 1242
Query: 231 VLHQQLTRAQQRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKLCFRYFGPY 290
+ +L +AQ K DKH + VGD L+L+ S+ + KL R++GPY
Sbjct: 1243 DIRYRLEQAQAVQKLHYDKHHRHVAYQVGDWALLRLRQRPTTSLPQSGTGKLKPRFYGPY 1302
Query: 291 KILERIGEVAYKLDXXXXXXXXXXXXXXXXKKAIRPDVQVQADLPASCMAEDAAIFPE-E 349
+I E I +VA +L+ KK PA AI PE E
Sbjct: 1303 RITELINDVAVRLELPAGARLHDVFHIGLLKKF---HGPPPGAPPALPPLHHGAIAPEPE 1359
Query: 350 ILHRQLIKRGNAAVPYGLVRWTGLPAALATWENL 383
R + RG V LV+W G A ATWE++
Sbjct: 1360 RAVRFRLARG---VRQALVQWKGESPASATWEDI 1390
>Os10g0317000 Retrotransposon gag protein family protein
Length = 1476
Score = 217 bits (553), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 181/334 (54%), Gaps = 7/334 (2%)
Query: 51 SMDFIEGLPKSEGYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQVI 110
+DF+E LP+ G IL VVD+FSK+ FIPL+HP+TA VA AF ++ + G+PQ +
Sbjct: 1084 GLDFVEALPRVGGKTVILTVVDRFSKYCHFIPLAHPYTAESVAQAFYADIVRLHGIPQSM 1143
Query: 111 ISDRDKIFTSALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHW 170
+SDRD +FTS+ W+EL +L K++M+++ HPQ+DGQTE N+ + YLRC P+ W
Sbjct: 1144 VSDRDPVFTSSFWRELMRLTGTKMHMTTAIHPQSDGQTEAANKVIVMYLRCFTGDRPRQW 1203
Query: 171 SKWLSQVQHWYNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPDVHVWLQERAHMNE 230
+WL ++ YNTAY ++L +P+ V++ R P + G++ V V + +R
Sbjct: 1204 VRWLPWAEYIYNTAYQTSLRDTPFRVVYGRDPPIIRSYEPGETRVAAVARSMADRDEFLA 1263
Query: 231 VLHQQLTRAQQRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKLCFRYFGPY 290
+ +L +AQ K DK + VGD+V L+L+ S+ + S KL RYFGPY
Sbjct: 1264 DVRYRLEQAQATHKKYYDKGHRAVSYEVGDLVLLRLRHRAPASLPQVSKGKLKPRYFGPY 1323
Query: 291 KILERIGEVAYKLDXXXXXXXXXXXXXXXXKKAIRPDVQVQADLPASCMAEDAAIFPE-E 349
+++E I VA +L+ KK + A AI PE E
Sbjct: 1324 RVVEVINPVAVRLELPPRAKLHDVFHVGLLKKFVGAAPPSPP---ALPAVHHGAIDPEPE 1380
Query: 350 ILHRQLIKRGNAAVPYGLVRWTGLPAALATWENL 383
+ R + RG V LV W G AA ATWE+L
Sbjct: 1381 RVTRSRLARGVRQV---LVHWKGESAASATWEDL 1411
>Os03g0377400 Chromo domain containing protein
Length = 257
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 134/225 (59%)
Query: 158 YLRCAVHSCPKHWSKWLSQVQHWYNTAYHSALDKSPYEVLFARKPTPFGLIDVGDSMVPD 217
YLRC + P W+KWL ++WYNT++H+AL SP++ LF P ++ + S+
Sbjct: 2 YLRCMTQATPTKWNKWLHLAEYWYNTSFHTALGCSPHKALFGADPHVSQVLVLLSSVHQS 61
Query: 218 VHVWLQERAHMNEVLHQQLTRAQQRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKR 277
V + ER ++ L QQL RAQ RMK+QADK RS+R F VGD V+LKLQPY Q SV R
Sbjct: 62 VVDLVSERNQLSAFLQQQLQRAQLRMKHQADKGRSERSFAVGDHVFLKLQPYTQSSVVNR 121
Query: 278 SCQKLCFRYFGPYKILERIGEVAYKLDXXXXXXXXXXXXXXXXKKAIRPDVQVQADLPAS 337
KL F++FGP++ILE+IG+ AY+L K + V LP
Sbjct: 122 PYPKLAFKFFGPFEILEKIGQSAYRLQLPDSSLIHPVFHVSQLKAHVPDHTPVFTSLPHP 181
Query: 338 CMAEDAAIFPEEILHRQLIKRGNAAVPYGLVRWTGLPAALATWEN 382
+ + A ++PEEIL R+L+K+GNA L++W+ LPA ATWE+
Sbjct: 182 VVLDAADVWPEEILDRRLVKKGNATHVQVLIKWSSLPAHQATWED 226
>Os09g0491900 Integrase, catalytic region domain containing protein
Length = 681
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 146/268 (54%), Gaps = 27/268 (10%)
Query: 51 SMDFIEGLPKSE-GYDTILVVVDKFSKFAKFIPLSHPFTALQVATAFIKNVYDIFGMPQV 109
SMDF+ GLP+++ G D+I VVVD+FSK A FIP A +A+ F + + GMP+
Sbjct: 239 SMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKT 298
Query: 110 IISDRDKIFTSALWQELFKLADVKLNMSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKH 169
I+SDRD F S W+ L+ +L S++ HPQTDGQTE +N+ L LR + K
Sbjct: 299 IVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKE 358
Query: 170 WSKWLSQVQHWYNTAYHSALDKSPYEVLFARKP-TPFGLIDVGDSMVPDVHVWLQERAHM 228
W + L V+ YN A HS + P+EV++ KP P L+ + LQER+ M
Sbjct: 359 WEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLP----------LQERSDM 408
Query: 229 N--------EVLHQQLTRA-QQRMKYQ---ADKHRSKRVFNVGDMVYLKLQPYVQMSVAK 276
+ +H++ A ++R KY A+K R K F GD+V++ L+ + +
Sbjct: 409 EASKHATYVKKIHEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLR---KDRFPQ 465
Query: 277 RSCQKLCFRYFGPYKILERIGEVAYKLD 304
+ KL R GP+++L +I + AYK++
Sbjct: 466 KRKSKLMPRGDGPFRVLSKINDNAYKIE 493
>Os09g0250500 Integrase, catalytic region domain containing protein
Length = 87
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 76/87 (87%)
Query: 136 MSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHWSKWLSQVQHWYNTAYHSALDKSPYE 195
MSSSYHPQTDGQTERLNQCLEAYLRC VH+CP WS WLSQ Q+WYNT++HSAL K+PYE
Sbjct: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
Query: 196 VLFARKPTPFGLIDVGDSMVPDVHVWL 222
VLFARKP+ FG+ D+G S VPDV VWL
Sbjct: 61 VLFARKPSHFGVADLGQSTVPDVQVWL 87
>Os04g0283700 Chromo domain containing protein
Length = 258
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 91/155 (58%), Gaps = 3/155 (1%)
Query: 228 MNEVLHQQLTRAQQRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKLCFRYF 287
M +++ Q L RAQQ+MK+ ADK RS R F +GD VYLKLQPYVQ SVA R+ KL F+YF
Sbjct: 1 MQKLVQQHLHRAQQQMKHFADKKRSFRTFAIGDWVYLKLQPYVQTSVAVRANHKLAFKYF 60
Query: 288 GPYKILERIGEVAYKLDXXXXXXXXXXXXXXXXKKAIRPDVQVQADLPASCMAEDAAIFP 347
GP++I +IG VAYKL K A VQ+ LP+S A P
Sbjct: 61 GPFQITAQIGTVAYKLQLPPTSSIHPVFHVSQLKSATGFTGHVQSHLPSSI---SALQVP 117
Query: 348 EEILHRQLIKRGNAAVPYGLVRWTGLPAALATWEN 382
IL R+L K+GN+ + LV+W+ P ATWE+
Sbjct: 118 WRILDRRLAKKGNSTISQVLVQWSESPPEDATWED 152
>Os10g0383200 Chromo domain containing protein
Length = 400
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/63 (88%), Positives = 59/63 (93%)
Query: 321 KKAIRPDVQVQADLPASCMAEDAAIFPEEILHRQLIKRGNAAVPYGLVRWTGLPAALATW 380
KKAIRPDVQVQADLPA+CMAEDAA+ PEEILHRQLIKRG +AVP GLVRWTGLPAALA W
Sbjct: 320 KKAIRPDVQVQADLPANCMAEDAAVIPEEILHRQLIKRGKSAVPNGLVRWTGLPAALAKW 379
Query: 381 ENL 383
ENL
Sbjct: 380 ENL 382
>Os06g0638300
Length = 695
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 81/160 (50%)
Query: 223 QERAHMNEVLHQQLTRAQQRMKYQADKHRSKRVFNVGDMVYLKLQPYVQMSVAKRSCQKL 282
Q +A + E + L +AQ RMKY AD+ RS+R VGDM YLK+QPY S+ KL
Sbjct: 523 QAKAAIFEAVKSNLEKAQARMKYFADRRRSERTLEVGDMAYLKMQPYRHNSLGLHGSLKL 582
Query: 283 CFRYFGPYKILERIGEVAYKLDXXXXXXXXXXXXXXXXKKAIRPDVQVQADLPASCMAED 342
+Y+GP+++ E++G VAY+L KK + P + LP +
Sbjct: 583 HSKYYGPFRVTEKVGAVAYRLLLQEGSLIHPVFHVSQLKKHLGPKAVPETALPLIDAEGN 642
Query: 343 AAIFPEEILHRQLIKRGNAAVPYGLVRWTGLPAALATWEN 382
P +L R++I R N V V W LPA ATWE+
Sbjct: 643 VLTEPVAVLERRMIPRNNEPVVQWKVHWANLPAEAATWED 682
>Os08g0355201 Integrase, catalytic region domain containing protein
Length = 275
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 89 ALQVATAFIKNVYDIFGMPQVIISDRDKIFTSALWQELFKLADVKLNMSSSYHPQTDGQT 148
A F + ++ FG P+++ISD F +++L + K N+++ YHPQT GQ
Sbjct: 15 ARHAKKMFTETIFLRFGTPRMVISDGGSHFIDKTFRDLLREMGAKHNVATPYHPQTSGQA 74
Query: 149 ERLNQCLEAYLRCAVHSCPKHWSKWLSQVQHWYNTAYHSALDKSPYEVLFAR 200
E LN+ ++ ++ V W LS Y T Y + + SPY++++ +
Sbjct: 75 ETLNKQIKNIMQKTVKKMGTGWKDRLSDALWAYRTVYKTPIGMSPYQIVYGK 126
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,475,914
Number of extensions: 482299
Number of successful extensions: 1429
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1414
Number of HSP's successfully gapped: 16
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)