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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0224300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Integrase, catalytic region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0423) R2 : 0.00768
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.167 (0.089) R2dN8 : 0.00992 R2N8 : 0.00768
σ : 0.796
deviance : 290.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.26 0.752 3.16 -0.593 0.232 1.12 -0.52 -0.0369 0.125 9.84 47.41 55 -- --
255.77 0.751 3.16 -0.621 0.248 1.26 -0.608 -- 0.121 10.1 47.54 54 -- --
255.85 0.751 3.16 -0.636 0.253 1.13 -- -1.63 0.126 9.72 47.46 54 -- --
257.16 0.752 3.16 -0.643 0.25 1.32 -- -- 0.121 9.67 47.6 54 -- --
259.41 0.754 3.16 -0.63 -- 1.31 -- -1.57 0.13 -- 47.46 54 -- --
266.73 0.766 3.17 -0.676 0.364 -- -0.751 -- 0.0925 10.8 -- -- -- --
269.07 0.768 3.17 -0.707 0.369 -- -- -- 0.0897 10.6 -- -- -- --
260.14 0.751 3.17 -0.599 -- 1.33 -- -- 0.128 -- 46.67 54 -- --
266.82 0.761 3.15 -- 0.22 1.35 -- -- 0.197 9.41 48.09 54 -- --
277.43 0.778 3.18 -0.714 -- -- -- -- 0.088 -- -- -- -- --
282.25 0.786 3.15 -- 0.374 -- -- -- 0.168 10.7 -- -- -- --
269.39 0.764 3.15 -- -- 1.48 -- -- 0.2 -- 47.44 54 -- --
290.87 0.796 3.16 -- -- -- -- -- 0.167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.11 wind 7 10 > th dose dependent rect. 21 13
3 252.46 radiation 30 30 > th dose independent rect. 10 2
5 253.25 atmosphere 1005 10 > th dose dependent rect. 9 6
6 253.27 atmosphere 1005 90 > th dose dependent rect. 9 4
7 253.30 atmosphere 1005 10 > th dose dependent rect. 9 4
11 253.36 atmosphere 1005 270 > th dose dependent rect. 7 4
12 253.45 humidity 70 4320 > th dose independent rect. 19 1
21 253.71 atmosphere 1005 90 > th dose dependent rect. 9 14
22 253.76 atmosphere 1005 270 > th dose dependent rect. 9 1
25 253.78 atmosphere 1005 10 > th dose dependent rect. 9 8
26 253.80 wind 9 90 > th dose dependent rect. 18 17
28 253.82 radiation 10 10 > th dose dependent rect. 10 2
30 253.84 atmosphere 995 43200 > th dose independent rect. 10 1
33 253.86 humidity 70 4320 < th dose independent rect. 19 1
35 253.89 humidity 80 4320 < th dose dependent rect. 4 2
40 253.94 radiation 1 90 > th dose dependent rect. 10 2
42 253.95 atmosphere 995 90 > th dose dependent rect. 9 18
43 253.97 atmosphere 995 43200 < th dose independent rect. 10 1
46 253.97 atmosphere 995 43200 < th dose dependent rect. 10 1
59 254.07 wind 9 90 > th dose dependent rect. 20 15
60 254.11 wind 7 10 > th dose independent rect. 21 8
65 254.11 wind 7 10 > th dose dependent rect. 21 8
81 254.18 wind 9 90 > th dose independent rect. 20 15
88 254.22 humidity 70 4320 < th dose independent rect. 19 12
96 254.25 wind 9 90 > th dose dependent rect. 18 4
99 254.26 atmosphere 1000 10 > th dose dependent rect. 9 18
101 254.28 humidity 70 4320 > th dose independent rect. 19 12
102 254.29 wind 9 43200 > th dose dependent rect. 10 1
116 254.35 humidity 70 4320 > th dose independent rect. 19 10
120 254.35 wind 9 10 > th dose independent rect. 21 14
124 254.36 wind 5 90 > th dose dependent rect. 21 1
127 254.38 humidity 70 4320 > th dose independent rect. 19 6
133 254.39 wind 7 90 > th dose independent rect. 21 1
144 254.44 wind 5 10 > th dose dependent rect. 21 2
147 254.48 wind 9 30 > th dose independent rect. 21 5
167 254.48 wind 9 30 > th dose dependent rect. 21 5
187 254.49 wind 9 90 > th dose independent rect. 18 17
188 254.49 radiation 40 270 < th dose independent rect. 10 21
191 254.50 atmosphere 995 10 > th dose dependent rect. 21 16
202 254.57 humidity 50 30 > th dose independent sin 5 NA
302 254.96 wind 1 10 > th dose dependent rect. 9 4
303 254.97 humidity 50 10 > th dose independent sin 3 NA
332 255.05 wind 5 10 > th dose independent rect. 12 1
349 255.09 wind 3 10 > th dose dependent rect. 21 16
355 255.11 radiation 40 90 > th dose independent rect. 14 22
365 255.14 temperature 30 30 < th dose independent rect. 21 16
367 255.14 atmosphere 995 270 > th dose dependent rect. 6 21
385 255.20 radiation 30 90 > th dose dependent rect. 14 22
443 255.30 wind 1 10 > th dose dependent rect. 7 6
446 255.33 wind 9 43200 < th dose independent rect. 5 3
460 255.38 radiation 10 90 > th dose dependent rect. 14 22
463 255.40 temperature 30 30 < th dose independent rect. 9 4
508 255.50 atmosphere 1010 1440 > th dose dependent rect. 10 1
516 255.51 radiation 40 4320 > th dose dependent rect. 7 4
534 255.52 atmosphere 1005 90 > th dose dependent sin 22 NA
556 255.58 atmosphere 995 270 > th dose dependent rect. 7 15
576 255.59 radiation 1 90 > th dose dependent rect. 7 5
598 255.64 wind 9 43200 < th dose independent rect. 7 1
602 255.64 radiation 10 10 > th dose dependent rect. 15 22
608 255.67 atmosphere 1010 10 > th dose independent sin 20 NA
616 255.69 atmosphere 1010 90 < th dose independent rect. 4 16
618 255.70 wind 9 43200 > th dose dependent rect. 5 2
639 255.74 wind 9 43200 > th dose dependent rect. 4 4
641 255.74 atmosphere 995 43200 < th dose dependent rect. 5 9
644 255.75 humidity 50 30 < th dose independent rect. 16 2
663 255.75 wind 9 4320 > th dose dependent rect. 14 1
670 255.77 humidity 50 30 < th dose dependent rect. 16 2
699 255.80 wind 9 43200 < th dose independent rect. 4 5
706 255.81 wind 9 43200 > th dose independent rect. 5 3
713 255.83 wind 9 43200 > th dose independent rect. 4 5
718 255.84 humidity 70 90 < th dose dependent rect. 10 1
721 255.84 radiation 1 10 > th dose dependent rect. 7 6
728 255.86 humidity 80 4320 < th dose independent rect. 4 2
785 255.89 humidity 80 270 > th dose independent rect. 7 4
786 255.89 humidity 60 270 > th dose dependent rect. 8 1
820 255.94 wind 3 720 > th dose independent rect. 1 3
822 255.95 wind 9 90 > th dose independent rect. 18 4
848 255.96 humidity 70 4320 < th dose dependent rect. 18 13
925 256.03 humidity 80 4320 > th dose independent rect. 4 2
930 256.04 humidity 70 4320 < th dose dependent rect. 18 3
976 256.09 humidity 50 10 < th dose independent rect. 13 3
978 256.09 humidity 50 10 < th dose dependent rect. 14 2