Os06g0266100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Integrase, catalytic region domain containing protein.
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Os06g0266100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Integrase, catalytic region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.15 | 0.343 | 8.29 | 0.0916 | 0.0893 | -0.776 | 0.363 | -3.03 | -0.117 | 16.1 | 7 | 3740 | -- | -- |
| 56.52 | 0.35 | 8.23 | 0.103 | 0.0911 | -0.288 | 0.503 | -- | -0.0875 | 17 | 7.2 | 2492 | -- | -- |
| 53.49 | 0.341 | 8.29 | 0.0964 | 0.0938 | -0.786 | -- | -3.06 | -0.115 | 16.8 | 7.008 | 3735 | -- | -- |
| 56.92 | 0.351 | 8.23 | 0.0627 | 0.117 | -0.283 | -- | -- | -0.0927 | 17.3 | 7 | 2518 | -- | -- |
| 53.88 | 0.342 | 8.29 | 0.096 | -- | -0.794 | -- | -3.1 | -0.117 | -- | 6.901 | 3619 | -- | -- |
| 57.52 | 0.356 | 8.24 | -0.024 | 0.101 | -- | 0.463 | -- | -0.13 | 17.3 | -- | -- | -- | -- |
| 58.04 | 0.357 | 8.24 | -0.0248 | 0.105 | -- | -- | -- | -0.128 | 17.8 | -- | -- | -- | -- |
| 57.51 | 0.353 | 8.23 | 0.0491 | -- | -0.273 | -- | -- | -0.1 | -- | 7.198 | 2492 | -- | -- |
| 56.98 | 0.352 | 8.23 | -- | 0.107 | -0.251 | -- | -- | -0.105 | 17.3 | 7.111 | 2517 | -- | -- |
| 58.62 | 0.358 | 8.24 | -0.028 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 58.06 | 0.356 | 8.24 | -- | 0.106 | -- | -- | -- | -0.125 | 17.8 | -- | -- | -- | -- |
| 57.57 | 0.353 | 8.23 | -- | -- | -0.256 | -- | -- | -0.109 | -- | 7.188 | 2406 | -- | -- |
| 58.64 | 0.357 | 8.24 | -- | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.28 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 2 | 50.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 6 | 50.49 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 8 | 50.50 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 10 | 50.54 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 11 | 50.55 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 20 | 50.62 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 148 | 51.16 | atmosphere | 1000.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 156 | 51.18 | atmosphere | 1000.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 479 | 51.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 485 | 51.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 503 | 51.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 507 | 51.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 516 | 51.90 | atmosphere | 1000.0 | 14400 | > th | dose independent | no | NA | NA |
| 517 | 51.90 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 531 | 51.91 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 542 | 51.92 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 545 | 51.93 | atmosphere | 1000.0 | 14400 | < th | dose independent | no | NA | NA |
| 546 | 51.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 581 | 51.95 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 583 | 51.95 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 594 | 51.96 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 11 | 3 |
| 610 | 51.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 659 | 52.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 660 | 52.02 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 666 | 52.02 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 668 | 52.02 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 698 | 52.07 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 807 | 52.20 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 867 | 52.27 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 922 | 52.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 931 | 52.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 956 | 52.34 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 15 | NA |