Os04g0191000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Retrotransposon gag protein family protein.
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Os04g0191000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Retrotransposon gag protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 291 | 0.801 | 3.13 | 0.765 | 0.328 | -1.64 | -0.886 | -0.382 | -0.0445 | 16.7 | 11.1 | 340 | -- | -- |
| 291.08 | 0.795 | 3.12 | 0.823 | 0.325 | -1.64 | -0.978 | -- | -0.0287 | 16.7 | 10.25 | 340 | -- | -- |
| 292.49 | 0.797 | 3.15 | 0.653 | 0.346 | -1.67 | -- | -1.13 | -0.0736 | 17.3 | 11.64 | 343 | -- | -- |
| 293.33 | 0.798 | 3.13 | 0.831 | 0.338 | -1.69 | -- | -- | -0.0251 | 17.5 | 11.74 | 363 | -- | -- |
| 296.93 | 0.803 | 3.15 | 0.593 | -- | -1.33 | -- | -0.973 | -0.119 | -- | 10.35 | 364 | -- | -- |
| 319.98 | 0.839 | 3.17 | 0.474 | 0.124 | -- | 1.28 | -- | -0.264 | 4.33 | -- | -- | -- | -- |
| 324.37 | 0.843 | 3.17 | 0.463 | 0.141 | -- | -- | -- | -0.271 | 5.39 | -- | -- | -- | -- |
| 297.59 | 0.803 | 3.13 | 0.753 | -- | -1.36 | -- | -- | -0.0782 | -- | 12.75 | 380 | -- | -- |
| 309.66 | 0.82 | 3.16 | -- | 0.215 | -1.3 | -- | -- | -0.165 | 17.7 | 11.61 | 364 | -- | -- |
| 325.4 | 0.843 | 3.18 | 0.468 | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
| 330.03 | 0.85 | 3.18 | -- | 0.148 | -- | -- | -- | -0.322 | 5.27 | -- | -- | -- | -- |
| 311.45 | 0.822 | 3.16 | -- | -- | -1.1 | -- | -- | -0.192 | -- | 10.82 | 372 | -- | -- |
| 331.18 | 0.849 | 3.19 | -- | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 282.88 | temperature | 10 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 3 | 284.43 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 7 | 284.52 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 8 | 284.53 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 15 | 285.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 16 | 285.19 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 185 | 287.36 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 9 |
| 368 | 288.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 409 | 288.87 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 422 | 288.93 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 546 | 289.52 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 564 | 289.57 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 581 | 289.62 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 585 | 289.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 644 | 289.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 753 | 290.31 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 19 | NA |
| 826 | 290.59 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 15 |
| 854 | 290.68 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 856 | 290.69 | humidity | 50 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 861 | 290.71 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 872 | 290.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 958 | 290.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |