BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0191000 Os04g0191000|AK121055
         (1463 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1  | chrM:235916-236392 FORWARD LENGTH=159              131   3e-30

>ATMG00860.1 | chrM:235916-236392 FORWARD LENGTH=159
          Length = 158

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 79/132 (59%), Gaps = 2/132 (1%)

Query: 678 LRHLRTVLSVLRQHRLFVKRSKCTFGSPSVSYLGH--VISEAGVAMDPAKVQAIHEWLVP 735
           + HL  VL +  QH+ +  R KC FG P ++YLGH  +IS  GV+ DPAK++A+  W  P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 736 RSARAVRSFLGLAGYYRKFVHNYGTIAAPLTALTKKDGFSWTEDTXXXXXXXXXXVTSAP 795
           ++   +R FLGL GYYR+FV NYG I  PLT L KK+   WTE            VT+ P
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 796 VLAMPDFAKPFT 807
           VLA+PD   PF 
Sbjct: 121 VLALPDLKLPFV 132



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 27,954,847
Number of extensions: 1092024
Number of successful extensions: 2115
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2115
Number of HSP's successfully gapped: 1
Length of query: 1463
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1352
Effective length of database: 8,063,393
Effective search space: 10901707336
Effective search space used: 10901707336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 118 (50.1 bits)