Os09g0250500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Integrase, catalytic region domain containing protein.
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Os09g0250500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Integrase, catalytic region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.55 | 0.264 | 10.4 | 1.02 | 0.263 | 0.546 | 0.0013 | -0.654 | 0.632 | 18.4 | 93 | 170 | -- | -- |
| 31.91 | 0.263 | 10.4 | 1.02 | 0.268 | 0.542 | 0.182 | -- | 0.632 | 18.3 | 93 | 181 | -- | -- |
| 31.55 | 0.262 | 10.4 | 1.02 | 0.262 | 0.546 | -- | -0.655 | 0.632 | 18.4 | 93 | 170 | -- | -- |
| 32.01 | 0.263 | 10.4 | 1.02 | 0.267 | 0.534 | -- | -- | 0.628 | 18.5 | 93.13 | 181 | -- | -- |
| 34.24 | 0.273 | 10.4 | 1.03 | -- | 0.36 | -- | -0.828 | 0.605 | -- | 93.48 | 141 | -- | -- |
| 35.54 | 0.279 | 10.4 | 1.05 | 0.134 | -- | -0.072 | -- | 0.569 | 20.3 | -- | -- | -- | -- |
| 35.56 | 0.279 | 10.4 | 1.06 | 0.134 | -- | -- | -- | 0.569 | 20.3 | -- | -- | -- | -- |
| 34.87 | 0.275 | 10.4 | 1.04 | -- | 0.343 | -- | -- | 0.601 | -- | 93.54 | 175 | -- | -- |
| 58.93 | 0.358 | 10.5 | -- | 0.29 | 0.644 | -- | -- | 0.536 | 18.4 | 92.94 | 169 | -- | -- |
| 36.55 | 0.283 | 10.4 | 1.06 | -- | -- | -- | -- | 0.568 | -- | -- | -- | -- | -- |
| 64.99 | 0.377 | 10.5 | -- | 0.13 | -- | -- | -- | 0.452 | 20.8 | -- | -- | -- | -- |
| 62.48 | 0.368 | 10.5 | -- | -- | 0.42 | -- | -- | 0.508 | -- | 93 | 152 | -- | -- |
| 65.96 | 0.379 | 10.5 | -- | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.33 | wind | 5.0 | 90 | > th | dose independent | rect. | 12 | 18 |
| 3 | 31.40 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 4 | 31.41 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 10 |
| 14 | 31.47 | wind | 3.0 | 90 | > th | dose dependent | rect. | 12 | 18 |
| 23 | 31.66 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 24 | 6 |
| 31 | 31.69 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 23 |
| 57 | 31.81 | wind | 1.0 | 90 | > th | dose dependent | rect. | 12 | 11 |
| 59 | 31.83 | humidity | 90.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 87 | 32.00 | wind | 5.0 | 90 | > th | dose independent | sin | 16 | NA |
| 131 | 32.10 | wind | 1.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 136 | 32.11 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 137 | 32.11 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 145 | 32.15 | wind | 1.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 155 | 32.16 | wind | 7.0 | 90 | < th | dose dependent | rect. | 8 | 16 |
| 163 | 32.18 | wind | 3.0 | 90 | > th | dose dependent | sin | 17 | NA |
| 169 | 32.19 | wind | 5.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 179 | 32.22 | humidity | 90.0 | 90 | > th | dose independent | rect. | 24 | 6 |
| 183 | 32.23 | wind | 5.0 | 90 | < th | dose independent | rect. | 8 | 17 |
| 196 | 32.25 | wind | 5.0 | 90 | < th | dose independent | sin | 15 | NA |
| 197 | 32.25 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 229 | 32.28 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 18 |
| 234 | 32.29 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 253 | 32.30 | wind | 7.0 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 292 | 32.34 | wind | 9.0 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 301 | 32.35 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 22 |
| 324 | 32.38 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 386 | 32.46 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 390 | 32.46 | wind | 7.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 402 | 32.48 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 412 | 32.49 | wind | 7.0 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 443 | 32.53 | wind | 9.0 | 90 | < th | dose dependent | sin | 18 | NA |
| 469 | 32.55 | humidity | 90.0 | 270 | > th | dose independent | rect. | 17 | 13 |
| 482 | 32.56 | wind | 9.0 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 503 | 32.57 | wind | 9.0 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 533 | 32.59 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 10 | 20 |
| 580 | 32.63 | wind | 5.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 582 | 32.63 | wind | 9.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 587 | 32.64 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 589 | 32.64 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 621 | 32.66 | wind | 5.0 | 90 | > th | dose independent | rect. | 12 | 7 |
| 628 | 32.66 | humidity | 90.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 746 | 32.74 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 761 | 32.76 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 774 | 32.76 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 801 | 32.78 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 803 | 32.78 | wind | 3.0 | 90 | > th | dose dependent | rect. | 12 | 6 |
| 805 | 32.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 932 | 32.82 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 19 |
| 943 | 32.83 | wind | 5.0 | 90 | < th | dose independent | rect. | 15 | 12 |
| 980 | 32.84 | wind | 5.0 | 90 | < th | dose independent | rect. | 13 | 23 |