BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0250500 Os09g0250500|AK062954
(87 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0250500 Integrase, catalytic region domain containing ... 184 1e-47
Os11g0224300 Integrase, catalytic region domain containing ... 155 6e-39
Os04g0682600 Integrase, catalytic region domain containing ... 128 1e-30
Os06g0266100 Integrase, catalytic region domain containing ... 117 1e-27
Os06g0713500 Integrase, catalytic region domain containing ... 115 8e-27
Os08g0123950 Integrase, catalytic region domain containing ... 105 5e-24
Os06g0493000 RNA-directed DNA polymerase (Reverse transcrip... 91 1e-19
Os04g0389000 Integrase, catalytic region domain containing ... 72 6e-14
Os10g0317000 Retrotransposon gag protein family protein 72 8e-14
Os04g0191000 Retrotransposon gag protein family protein 71 1e-13
Os03g0377400 Chromo domain containing protein 65 8e-12
>Os09g0250500 Integrase, catalytic region domain containing protein
Length = 87
Score = 184 bits (467), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE
Sbjct: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
Query: 61 VLFARKPSHFGVADLGQSTVPDVQVWL 87
VLFARKPSHFGVADLGQSTVPDVQVWL
Sbjct: 61 VLFARKPSHFGVADLGQSTVPDVQVWL 87
>Os11g0224300 Integrase, catalytic region domain containing protein
Length = 383
Score = 155 bits (392), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 76/87 (87%)
Query: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
MSSSYHPQTDGQTERLNQCLEAYLRC VH+CP WS WLSQ Q+WYNT++HSAL K+PYE
Sbjct: 136 MSSSYHPQTDGQTERLNQCLEAYLRCAVHSCPKHWSKWLSQVQHWYNTAYHSALDKSPYE 195
Query: 61 VLFARKPSHFGVADLGQSTVPDVQVWL 87
VLFARKP+ FG+ D+G S VPDV VWL
Sbjct: 196 VLFARKPTPFGLIDVGDSMVPDVHVWL 222
>Os04g0682600 Integrase, catalytic region domain containing protein
Length = 395
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 68/87 (78%)
Query: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
MSSSYHPQ+DGQTER+NQC+E +LRC VH+CP++W WL+ AQYWYNTSFHSALG TP+E
Sbjct: 87 MSSSYHPQSDGQTERVNQCVEMFLRCFVHSCPSRWKHWLALAQYWYNTSFHSALGMTPFE 146
Query: 61 VLFARKPSHFGVADLGQSTVPDVQVWL 87
VLF KP +FG++ D+ WL
Sbjct: 147 VLFGHKPRYFGLSTSSVDAPGDLASWL 173
>Os06g0266100 Integrase, catalytic region domain containing protein
Length = 399
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
+S++YHPQ+DGQTER+NQCLE YLRC HA P+KW+ WL A++WYNT+FHSAL +P+E
Sbjct: 82 LSTAYHPQSDGQTERVNQCLEIYLRCFTHATPSKWAVWLHLAEFWYNTAFHSALNTSPFE 141
Query: 61 VLFARKPSHFGVADLGQSTVPDVQVWL 87
VL+ P +FG+ +P++QVWL
Sbjct: 142 VLYGHPPRYFGIHS-EDCAIPELQVWL 167
>Os06g0713500 Integrase, catalytic region domain containing protein
Length = 248
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
MSSSYHPQ+DGQTER+NQCLE +LRC +HA P KW++WL A++WY +S+ S + KTP+E
Sbjct: 40 MSSSYHPQSDGQTERVNQCLEIFLRCFIHATPRKWAAWLYLAEFWYYSSYQSTVHKTPFE 99
Query: 61 VLFARKPSHFGVADLGQSTVPDVQVWL 87
V++ +PSHFG++ + VPD+ WL
Sbjct: 100 VVYGYQPSHFGIS-MEDCVVPDLAEWL 125
>Os08g0123950 Integrase, catalytic region domain containing protein
Length = 783
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 56/72 (77%)
Query: 2 SSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYEV 61
SS+YHPQ+DGQTER NQCLE YL+C V + P+KW SWL A+YWYN S+HS + +TP+E
Sbjct: 451 SSAYHPQSDGQTERGNQCLEIYLKCFVQSAPSKWPSWLHLAEYWYNNSYHSTIDRTPFEA 510
Query: 62 LFARKPSHFGVA 73
L+ P HFG++
Sbjct: 511 LYGYPPRHFGIS 522
>Os06g0493000 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 866
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%)
Query: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
SS+YHPQTDGQ+ER+NQCLE YLRC + P KW + L A++WYNT+FH++LG +PY+
Sbjct: 607 FSSAYHPQTDGQSERVNQCLENYLRCMTSSKPRKWKALLPHAEWWYNTTFHTSLGMSPYQ 666
Query: 61 VLFARK 66
L K
Sbjct: 667 ALHGIK 672
>Os04g0389000 Integrase, catalytic region domain containing protein
Length = 538
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%)
Query: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
+SS++HPQ+DGQ+E N+ + YLRC P W WL A+Y YNTS+ S+L +P+
Sbjct: 245 LSSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRHWLRWLPWAEYCYNTSYQSSLRTSPFR 304
Query: 61 VLFARKPSHFGVADLGQSTVPDVQ 84
V++ R+P + G + + VQ
Sbjct: 305 VVYGREPPTLRAYEPGSTRLLAVQ 328
>Os10g0317000 Retrotransposon gag protein family protein
Length = 1476
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
M+++ HPQ+DGQTE N+ + YLRC P +W WL A+Y YNT++ ++L TP+
Sbjct: 1169 MTTAIHPQSDGQTEAANKVIVMYLRCFTGDRPRQWVRWLPWAEYIYNTAYQTSLRDTPFR 1228
Query: 61 VLFARKPSHFGVADLGQSTVPDV 83
V++ R P + G++ V V
Sbjct: 1229 VVYGRDPPIIRSYEPGETRVAAV 1251
>Os04g0191000 Retrotransposon gag protein family protein
Length = 1463
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 1 MSSSYHPQTDGQTERLNQCLEAYLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYE 60
M++++HPQ+DGQ+E N+ + YLRC P +W WL A++ +NT++ S+L TP+
Sbjct: 1148 MTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRWLPWAEFIFNTAYQSSLRDTPFR 1207
Query: 61 VLFARKPSHFGVADLGQSTVPDV 83
V++ R P + G + V V
Sbjct: 1208 VVYGRDPPSIRSYEAGDTRVAAV 1230
>Os03g0377400 Chromo domain containing protein
Length = 257
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%)
Query: 23 YLRCTVHACPTKWSSWLSQAQYWYNTSFHSALGKTPYEVLFARKP 67
YLRC A PTKW+ WL A+YWYNTSFH+ALG +P++ LF P
Sbjct: 2 YLRCMTQATPTKWNKWLHLAEYWYNTSFHTALGCSPHKALFGADP 46
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.129 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,397,379
Number of extensions: 116169
Number of successful extensions: 349
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 11
Length of query: 87
Length of database: 17,035,801
Length adjustment: 57
Effective length of query: 30
Effective length of database: 14,059,603
Effective search space: 421788090
Effective search space used: 421788090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)