Os03g0377400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chromo domain containing protein.
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Os03g0377400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Chromo domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.2 | 0.515 | 3 | -0.913 | 0.121 | 73.5 | 0.119 | -302 | 0.13 | 3.57 | 79.57 | 98 | 0.198 | 4.03 |
| 139.62 | 0.555 | 2.74 | 0.151 | 0.174 | 2.98 | -0.418 | -- | 0.101 | 4.72 | 79.57 | 98 | 0.198 | 4.03 |
| 120.11 | 0.51 | 3 | -0.91 | 0.126 | 73.1 | -- | -300 | 0.125 | 4 | 79.51 | 100 | 0.163 | 4.09 |
| 130.02 | 0.531 | 2.74 | 0.15 | 0.142 | 3.4 | -- | -- | 0.105 | 3.8 | 85 | 134 | 1.07 | 2.05 |
| 120.95 | 0.512 | 3 | -0.897 | -- | 73.1 | -- | -299 | 0.135 | -- | 79.52 | 100 | 0.185 | 4.08 |
| 152.2 | 0.578 | 2.75 | 0.189 | 0.214 | -- | -0.158 | -- | 0.0916 | 4.05 | -- | -- | -- | -- |
| 152.26 | 0.578 | 2.75 | 0.19 | 0.213 | -- | -- | -- | 0.0925 | 3.79 | -- | -- | -- | -- |
| 130.75 | 0.533 | 2.74 | 0.202 | -- | 3.45 | -- | -- | 0.126 | -- | 85 | 124 | 1.12 | 2 |
| 130.96 | 0.533 | 2.74 | -- | 0.14 | 3.45 | -- | -- | 0.104 | 3.92 | 85 | 134 | 1.07 | 2.05 |
| 154.75 | 0.581 | 2.75 | 0.199 | -- | -- | -- | -- | 0.0981 | -- | -- | -- | -- | -- |
| 153.21 | 0.579 | 2.75 | -- | 0.216 | -- | -- | -- | 0.0713 | 3.78 | -- | -- | -- | -- |
| 131.78 | 0.535 | 2.74 | -- | -- | 3.48 | -- | -- | 0.104 | -- | 85 | 122 | 1.17 | 1.95 |
| 155.79 | 0.583 | 2.75 | -- | -- | -- | -- | -- | 0.076 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.66 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 24 | 4 |
| 2 | 121.91 | humidity | 80.0 | 90 | < th | dose independent | rect. | 1 | 2 |
| 3 | 121.99 | humidity | 80.0 | 90 | < th | dose independent | rect. | 24 | 4 |
| 5 | 122.13 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 1 | 2 |
| 20 | 127.92 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 25 | 128.37 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 2 |
| 61 | 135.88 | wind | 1.0 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 62 | 136.09 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 92 | 139.48 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 107 | 139.76 | wind | 3.0 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 109 | 139.80 | wind | 1.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 113 | 139.80 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 4 |
| 115 | 139.80 | wind | 1.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 120 | 139.82 | wind | 3.0 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 137 | 139.95 | temperature | 20.0 | 30 | < th | dose independent | rect. | 2 | 2 |
| 159 | 140.13 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 171 | 140.25 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 178 | 140.33 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 22 | 11 |
| 191 | 140.40 | wind | 5.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 203 | 140.47 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 254 | 140.93 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 255 | 140.95 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 329 | 141.58 | wind | 5.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 336 | 141.62 | wind | 5.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 408 | 142.00 | temperature | 20.0 | 30 | < th | dose independent | rect. | 24 | 5 |
| 466 | 142.24 | wind | 5.0 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 515 | 142.47 | wind | 3.0 | 1440 | > th | dose dependent | sin | 9 | NA |
| 598 | 142.78 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 613 | 142.83 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 616 | 142.83 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 637 | 142.86 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 22 | 15 |
| 645 | 142.87 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 729 | 143.11 | humidity | 60.0 | 90 | < th | dose independent | rect. | 9 | 1 |
| 883 | 143.56 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 22 | 15 |
| 889 | 143.59 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 891 | 143.59 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 978 | 143.79 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |