Os04g0389000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Integrase, catalytic region domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0389000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Integrase, catalytic region domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.93 | 0.484 | 7.36 | 1.58 | 0.687 | -1.86 | 0.488 | 1.91 | 0.021 | 18.5 | 10.05 | 9 | -- | -- |
| 108.73 | 0.489 | 7.39 | 1.33 | 0.699 | -1.89 | 0.656 | -- | -0.0457 | 18.2 | 11.65 | 8 | -- | -- |
| 106.44 | 0.484 | 7.36 | 1.57 | 0.681 | -1.85 | -- | 1.98 | 0.0194 | 18.5 | 9.734 | 8 | -- | -- |
| 109.7 | 0.491 | 7.4 | 1.31 | 0.693 | -1.82 | -- | -- | -0.0538 | 18.5 | 9.734 | 8 | -- | -- |
| 129.25 | 0.53 | 7.35 | 1.54 | -- | -1.54 | -- | 2.19 | -0.0244 | -- | 10.01 | 3 | -- | -- |
| 140.92 | 0.557 | 7.45 | 0.956 | 0.647 | -- | -0.0616 | -- | -0.306 | 21.5 | -- | -- | -- | -- |
| 140.93 | 0.556 | 7.45 | 0.959 | 0.648 | -- | -- | -- | -0.306 | 21.5 | -- | -- | -- | -- |
| 133.29 | 0.54 | 7.39 | 1.23 | -- | -1.51 | -- | -- | -0.109 | -- | 12.1 | 5 | -- | -- |
| 150.49 | 0.574 | 7.45 | -- | 0.621 | -1.19 | -- | -- | -0.274 | 19.6 | 9.734 | 8 | -- | -- |
| 165.58 | 0.601 | 7.44 | 0.963 | -- | -- | -- | -- | -0.308 | -- | -- | -- | -- | -- |
| 165.15 | 0.601 | 7.48 | -- | 0.649 | -- | -- | -- | -0.413 | 21.6 | -- | -- | -- | -- |
| 171.13 | 0.611 | 7.43 | -- | -- | -1.12 | -- | -- | -0.289 | -- | 7.613 | 2 | -- | -- |
| 190.03 | 0.643 | 7.46 | -- | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 102.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 18 | 103.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 38 | 104.67 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 56 | 105.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 21 |
| 61 | 105.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 62 | 105.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 94 | 105.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 111 | 105.98 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 129 | 106.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 145 | 106.38 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 163 | 106.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 178 | 106.66 | temperature | 15 | 10 | > th | dose dependent | sin | 19 | NA |
| 220 | 106.89 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 223 | 106.92 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 255 | 107.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 292 | 107.38 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 307 | 107.42 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 344 | 107.52 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 349 | 107.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 353 | 107.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 21 |
| 360 | 107.60 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 399 | 107.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 417 | 107.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 423 | 107.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 424 | 107.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 430 | 107.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 442 | 107.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 17 |
| 458 | 108.01 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 493 | 108.14 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 499 | 108.19 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 503 | 108.20 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 567 | 108.42 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 633 | 108.68 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 651 | 108.75 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 669 | 108.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 685 | 108.88 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 697 | 108.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 698 | 108.88 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 704 | 108.91 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 710 | 108.93 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 711 | 108.93 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 769 | 109.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 804 | 109.21 | temperature | 30 | 1440 | < th | dose dependent | sin | 23 | NA |
| 915 | 109.55 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 20 |