Os06g0638300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os06g0638300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.29 | 0.356 | 7.63 | 1.52 | 0.516 | 0.582 | -0.228 | -1.26 | 0.682 | 19.9 | 39.55 | 4630 | -- | -- |
| 59.59 | 0.36 | 7.62 | 1.51 | 0.529 | 0.586 | -0.248 | -- | 0.691 | 20 | 39.65 | 4630 | -- | -- |
| 57.43 | 0.353 | 7.63 | 1.52 | 0.514 | 0.585 | -- | -1.26 | 0.681 | 19.9 | 39.67 | 4625 | -- | -- |
| 59.57 | 0.359 | 7.62 | 1.48 | 0.512 | 0.611 | -- | -- | 0.683 | 20.1 | 39.99 | 4611 | -- | -- |
| 71.32 | 0.393 | 7.61 | 1.53 | -- | 0.616 | -- | -1.25 | 0.674 | -- | 39.52 | 4537 | -- | -- |
| 66.71 | 0.383 | 7.62 | 1.59 | 0.514 | -- | -0.239 | -- | 0.647 | 20.3 | -- | -- | -- | -- |
| 66.88 | 0.383 | 7.62 | 1.59 | 0.515 | -- | -- | -- | 0.647 | 20.3 | -- | -- | -- | -- |
| 73.7 | 0.4 | 7.61 | 1.51 | -- | 0.672 | -- | -- | 0.667 | -- | 39.94 | 4541 | -- | -- |
| 102.45 | 0.471 | 7.61 | -- | 0.471 | 0.884 | -- | -- | 0.649 | 20.3 | 39.4 | 24528 | -- | -- |
| 81.56 | 0.422 | 7.6 | 1.59 | -- | -- | -- | -- | 0.642 | -- | -- | -- | -- | -- |
| 133.79 | 0.541 | 7.66 | -- | 0.508 | -- | -- | -- | 0.47 | 20.5 | -- | -- | -- | -- |
| 79.46 | 0.415 | 7.72 | -- | -- | 1.35 | -- | -- | 0.149 | -- | 58.91 | 40467 | -- | -- |
| 148.25 | 0.568 | 7.64 | -- | -- | -- | -- | -- | 0.465 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.28 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 3 | 54.34 | wind | 9.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 5 | 54.54 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 12 | 55.27 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 20 |
| 14 | 55.31 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 15 | 55.34 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 17 | 55.34 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 6 |
| 18 | 55.34 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 121 | 55.60 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 154 | 55.64 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 18 | 22 |
| 158 | 55.66 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 4 | 12 |
| 184 | 55.68 | humidity | 60.0 | 14400 | < th | dose dependent | no | NA | NA |
| 264 | 55.69 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 284 | 55.71 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 308 | 55.74 | radiation | 10.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 347 | 55.81 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 351 | 55.84 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 381 | 55.87 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 11 | 7 |
| 386 | 55.88 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 404 | 55.89 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 10 | 15 |
| 422 | 55.91 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 440 | 55.92 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 486 | 55.95 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 500 | 55.97 | radiation | 10.0 | 43200 | < th | dose dependent | no | NA | NA |
| 547 | 55.98 | humidity | 60.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 556 | 56.01 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 560 | 56.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 562 | 56.02 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 566 | 56.02 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 568 | 56.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 584 | 56.04 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 585 | 56.04 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 601 | 56.04 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 15 | 23 |
| 604 | 56.05 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 606 | 56.06 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 611 | 56.06 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 613 | 56.07 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 624 | 56.07 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 626 | 56.08 | radiation | 10.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 627 | 56.08 | radiation | 40.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 643 | 56.09 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 649 | 56.10 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 652 | 56.10 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 656 | 56.11 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 15 | 18 |
| 663 | 56.12 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 702 | 56.12 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 714 | 56.13 | humidity | 60.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 717 | 56.13 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 760 | 56.14 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 798 | 56.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 906 | 56.19 | radiation | 20.0 | 43200 | > th | dose independent | sin | 19 | NA |
| 996 | 56.21 | humidity | 60.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 999 | 56.21 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 1000 | 56.21 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 9 |