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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0491900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Integrase, catalytic region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0434) R2 : 0.0944
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.36 (0.822) R2dE : 0.0847 R2E : 0.0798
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.218 (0.0914) R2dN8 : 0.0146 R2N8 : 0.00975
σ : 0.816
deviance : 306.93
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7.335
memory length : 178
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.3
open length of G : 0.235

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.8 0.819 3.01 0.458 0.134 23.7 -0.272 108 0.236 0.0726 7.007 89 8.01 1
600.55 1.14 2.85 0.275 1.54 13.7 1.01 -- 0.503 17.6 7.269 109 8.35 0.667
304.11 0.812 3.01 0.469 0.135 23.8 -- 109 0.237 0.393 7.016 89 8.01 1.02
372.45 0.899 2.95 -0.287 0.224 12.8 -- -- 0.331 15.4 7.392 147 8.37 0.259
305.26 0.814 3 0.471 -- 23.6 -- 108 0.239 -- 7.032 90 8.02 1
333.57 0.856 2.95 0.172 0.0903 -- -0.362 -- 0.221 0.102 -- -- -- --
334.05 0.856 2.95 0.185 0.1 -- -- -- 0.222 1.68 -- -- -- --
307.1 0.816 2.92 0.176 -- 5.37 -- -- 0.328 -- 7.368 150 8.38 0.248
306.13 0.815 2.94 -- 0.176 5.66 -- -- 0.246 0.724 7.4 128 8.29 0.184
334.67 0.855 2.95 0.189 -- -- -- -- 0.224 -- -- -- -- --
334.96 0.856 2.96 -- 0.104 -- -- -- 0.201 1.74 -- -- -- --
306.93 0.816 2.95 -- -- 5.36 -- -- 0.218 -- 7.335 178 8.3 0.235
335.61 0.855 2.96 -- -- -- -- -- 0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 303.83 wind 7.0 90 > th dose independent rect. 8 1
2 303.89 wind 7.0 90 > th dose dependent rect. 8 1
98 319.84 temperature 25.0 720 > th dose dependent rect. 4 1
123 320.97 radiation 20.0 270 > th dose dependent rect. 6 1
137 321.08 temperature 25.0 10 < th dose dependent rect. 9 1
149 321.46 radiation 20.0 270 > th dose independent rect. 6 1
164 321.47 temperature 20.0 90 < th dose independent rect. 22 8
175 321.67 temperature 25.0 720 > th dose independent rect. 4 1
180 321.74 temperature 20.0 90 < th dose independent rect. 22 1
181 321.74 temperature 20.0 90 < th dose independent rect. 22 3
196 322.01 radiation 30.0 10 < th dose independent rect. 9 1
205 322.15 temperature 20.0 10 > th dose independent rect. 22 11
233 322.74 humidity 50.0 720 < th dose independent rect. 13 1
237 322.79 temperature 30.0 10 < th dose dependent rect. 20 15
244 322.85 temperature 20.0 30 > th dose independent rect. 16 17
245 322.85 atmosphere 1000.0 30 < th dose dependent rect. 9 1
272 323.10 wind 3.0 30 > th dose independent rect. 9 6
304 323.39 temperature 20.0 30 > th dose independent rect. 10 23
312 323.53 wind 3.0 30 < th dose independent rect. 6 7
326 323.66 humidity 80.0 30 > th dose dependent rect. 10 2
343 323.79 temperature 30.0 10 < th dose dependent rect. 23 12
352 323.84 radiation 40.0 90 > th dose dependent rect. 8 1
380 323.91 temperature 20.0 30 > th dose independent rect. 19 14
421 324.13 radiation 20.0 10 < th dose independent rect. 11 12
437 324.23 wind 3.0 30 < th dose independent rect. 6 10
450 324.29 temperature 20.0 30 > th dose independent rect. 15 23
451 324.30 wind 3.0 30 > th dose independent rect. 5 10
474 324.40 temperature 30.0 10 < th dose dependent rect. 18 17
501 324.53 wind 5.0 30 < th dose dependent rect. 6 6
502 324.53 temperature 20.0 30 < th dose dependent rect. 4 21
527 324.65 atmosphere 1015.0 30 < th dose independent rect. 15 23
535 324.69 temperature 20.0 30 < th dose dependent rect. 23 8
538 324.70 temperature 20.0 30 > th dose independent rect. 15 21
542 324.71 temperature 20.0 30 < th dose independent sin 9 NA
564 324.78 temperature 30.0 30 < th dose dependent rect. 20 10
594 324.85 radiation 30.0 10 < th dose dependent rect. 11 12
620 324.90 temperature 25.0 1440 < th dose independent rect. 4 1
623 324.91 atmosphere 1010.0 270 > th dose independent rect. 21 1
650 324.94 precipitation 0.1 4320 < th dose independent rect. 2 10
653 324.94 precipitation 0.1 4320 < th dose dependent rect. 2 10
659 324.96 temperature 20.0 90 < th dose independent rect. 3 21
663 324.97 precipitation 0.1 4320 > th dose independent rect. 2 10
670 324.99 precipitation 0.1 4320 < th dose independent rect. 7 1
672 324.99 precipitation 0.1 4320 < th dose dependent rect. 7 1
676 325.00 precipitation 0.1 4320 > th dose dependent rect. 2 10
689 325.05 atmosphere 1015.0 30 < th dose independent rect. 13 23
700 325.09 temperature 20.0 30 > th dose independent rect. 13 23
720 325.13 temperature 20.0 10 < th dose dependent rect. 24 1
722 325.14 precipitation 0.1 4320 < th dose independent rect. 6 3
725 325.14 precipitation 0.1 4320 < th dose dependent rect. 6 3
741 325.17 wind 5.0 30 < th dose dependent rect. 6 11
744 325.18 wind 3.0 30 > th dose independent sin 3 NA
756 325.19 radiation 30.0 10 < th dose independent rect. 11 22
766 325.21 precipitation 0.1 4320 < th dose independent rect. 6 6
768 325.21 precipitation 0.1 4320 < th dose dependent rect. 6 6
780 325.25 atmosphere 1015.0 720 < th dose independent rect. 6 16
786 325.26 atmosphere 1005.0 30 > th dose dependent rect. 12 18
788 325.27 atmosphere 995.0 14400 > th dose independent rect. 7 3
807 325.31 temperature 25.0 30 < th dose dependent rect. 2 23
821 325.35 atmosphere 1015.0 270 < th dose independent rect. 23 1
842 325.38 temperature 20.0 720 > th dose independent rect. 21 1
853 325.38 temperature 30.0 30 < th dose dependent rect. 23 7
857 325.39 precipitation 0.1 4320 < th dose independent sin 4 NA
860 325.39 precipitation 0.1 4320 < th dose dependent sin 4 NA
863 325.40 precipitation 0.1 4320 > th dose independent sin 4 NA
875 325.41 precipitation 0.1 4320 > th dose independent rect. 2 15
877 325.41 temperature 25.0 720 < th dose dependent rect. 22 1
897 325.43 temperature 25.0 10 < th dose dependent rect. 4 7
931 325.48 precipitation 0.1 4320 > th dose independent rect. 8 3
935 325.48 precipitation 0.1 4320 > th dose dependent rect. 8 3
938 325.49 precipitation 0.1 4320 < th dose independent rect. 8 3
947 325.49 precipitation 0.1 4320 < th dose dependent rect. 8 3
954 325.50 precipitation 0.1 4320 > th dose independent rect. 6 6
961 325.50 precipitation 0.1 4320 > th dose dependent rect. 6 6
972 325.51 precipitation 0.1 4320 > th dose dependent rect. 5 4
976 325.51 precipitation 0.1 4320 > th dose dependent rect. 2 15
987 325.52 precipitation 0.1 4320 > th dose dependent sin 4 NA
993 325.53 temperature 20.0 30 > th dose independent sin 10 NA
996 325.53 precipitation 0.1 4320 > th dose independent rect. 5 4